Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1007 ATGATGTGGCTCAATAGGCATAGACACAATATTGCGACTCTGTTACCACACACAAAAAAGTTGTTGCCAGTGATCATGTCGAGAATTTCCTTGAAGGAGAATGGTGGTGAGGTTTCTGCCACGAAGGATTATACCAATGGTGGGGGTGTGAGGGACTTGTATGGTGAGGATAGCGCCACTGAGGACCATCTTATCACTCCATGGACCTTCTCTGTGGCCAGTGGATACAGTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCCTTTACTGAGGGAGAGAGAGATGCTCATTACTTGCGTGGCCTTTTGCCCCCAGCTGTCCTCAATCAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCATGATGGATCTCCAGGAGAGGAATGAAAGGCTATTCTACAGGCTTCTTATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACGGTTGGAGAAGCCTGTCAGAAATACGGAAGCATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAAGAAAAAGGAAAGATCCTTGAAGTACTGAAAAACTGGCCAGAAAAGAGTATTCAAGTTATTGTTGTGACCGATGGTGAGCGTATATTAGGACTTGGAGATCTTGGCTGCCAGGGAATGGGAATTCCTGTTGGGAAACTTTCTCTCTATACTGCTTTAGGAGGTGTTCGCCCTTCGTCCTGCTTGCCTATTACCATTGATGTTGGCACAAACAACGAAAAGTTGCTGAATGATGAGTTTTACATTGGGCTTAGACAAAGGCGTGCAACTGGGAAGGAATATGCGGAGCTTCTAGACGAGTTTATGCGCGCAGTTAAGCAGAACTATGGAGAGAAAGTTCTCATACAGTTTGAGGATTTCGCCAATCATAATGCATTTGATCTGCTGGCGAAATACAGTTCATCTCATCTTGTTTTTAACGATGATATCCAGGGCACGGCATCTGTTGTGTTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCACACCTTCTTGTTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATTGCTCTTGAGATTTCAAAGCAGACAAATGCTCCAGTGGAAGAGACCCGAAAGAAGATCTGGCTTGTGGATTCAAAGGGACTTATTGTTAGCTCTCGTCTGGAATCACTTCAGCACTTCAAAAAGCCTTGGGCACATGAGCATGAACCTGTGAAGGGGCTACTAGATGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAGGTGGTTGAAACCATGGCATTCTTGAATGAGAAACCACTCATTCTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTACACATGGAGCAAGGGTAAAGCAATCTTTGCTAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAACTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGTTTTGGGTTGGGATTGATCATCTCTGGTGCAATCCGTGTGCGTGATGAGATGCTCCTGGCAGCCTCCGAAGCTTTGGCTGCACAAGTATCAGAGGAGAACTATGATAAGGGACTGATTTACCCTCCATTCTCAAACATCAGGAAGATATCAGCCCATATTGCGGCTAAAGTGGCGGCTAAGGCATATGATCTAGGTTTGGCTTCTCATCTGCCTCGACCAAAGGATCTTGTTAAATATGCAGAAAGTTGCATGTACAGCCCCGGCTACCGAAGCTACCGTTGA 1845 0.458 MMWLNRHRHNIATLLPHTKKLLPVIMSRISLKENGGEVSATKDYTNGGGVRDLYGEDSATEDHLITPWTFSVASGYSLLRDPRYNKGLAFTEGERDAHYLRGLLPPAVLNQELQEKRLMHNLRQYEVPLHRYMAMMDLQERNERLFYRLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQRRATGKEYAELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLAKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTNAPVEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVETMAFLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFSNIRKISAHIAAKVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1007 614 PRINTS Malic enzyme signature 145 169 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 PRINTS Malic enzyme signature 205 234 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 PRINTS Malic enzyme signature 241 263 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 PRINTS Malic enzyme signature 301 319 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 PRINTS Malic enzyme signature 326 342 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 PRINTS Malic enzyme signature 357 373 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 PRINTS Malic enzyme signature 460 476 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 330 613 IPR036291 -
Vra5g1007 614 Pfam Malic enzyme, NAD binding domain 330 582 IPR012302 GO:0051287
Vra5g1007 614 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 54 329 IPR046346 -
Vra5g1007 614 Pfam Malic enzyme, N-terminal domain 139 319 IPR012301 GO:0004471
Vra5g1007 614 SMART malic_2 139 320 IPR012301 GO:0004471
Vra5g1007 614 CDD NAD_bind_1_malic_enz 330 608 - -
Vra5g1007 614 Gene3D - 328 614 - -
Vra5g1007 614 PANTHER MALIC ENZYME 33 614 - -
Vra5g1007 614 PANTHER MALIC ENZYME-RELATED 33 614 - -
Vra5g1007 614 ProSitePatterns Malic enzymes signature. 326 342 IPR015884 GO:0004471
Vra5g1007 614 PIRSF ME 37 614 IPR001891 GO:0004470|GO:0004471
Vra5g1007 614 SMART Malic_M_2 330 583 IPR012302 GO:0051287
Vra5g1007 614 Gene3D - 73 327 IPR037062 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1007 Vra-Chr5 16491169 16496012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1007 K00029 - gmx:100801564 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1007 5 16491169 16496012 Vra5g1007 5 16491169 16496012 ECH
Vra7g3280 7 52354683 52359769 Vra5g1007 5 16491169 16496012 ECH
Vra1g0478 1 5746597 5751304 Vra5g1007 5 16491169 16496012 ECH
Vra9g0183 9 1278012 1283590 Vra5g1007 5 16491169 16496012 ECH
Vra5g2478 5 31741408 31746783 Vra5g1007 5 16491169 16496012 ECH