Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0178 ATGGAAAACAATTCAGCAGTGATTGCAAAGAGAGTGTGGAACATAATACGTGTTGCATTCTTCATGTTGAGAAAAAGCATATCAAAGGGCAAGCTAATGATGCACCTTAACGTCATGCTCAAACGCCGCAGCAAACTCGCCGGCAAAGCCATCACCAACCTCATGTTCCACCACCACAACCACCATGTCGGAGTCCCCGGCAACGACCTCCAGTTCTCAGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCAGCAACTTCTTTGCCACCAAGCGCCACCGCCACAACCCTTTCTTCACGTGCGCTCACGCGCCGCCCACCTTCGAGGACGAGGCCCTGACCGTTAATGTCGTTAAGGGCGTGTTGGAGATGCTGAACAATGAGGCGGTGGTGGAGGCGCCCCCGGCCGCCGCTTTCCGTAGCCCTGTGGTGAGGCAGCTTAGGGTTACAGACTCTCCGTTCCCACTCGGTGAGTACGAGGACGACAAGGACAACCATGTAGACAAGGCGGCCGAAGAATTCATAAAGAGGTTTTACAAGGAATTGAAGAAGCAAACTTGA 567 0.5379 MENNSAVIAKRVWNIIRVAFFMLRKSISKGKLMMHLNVMLKRRSKLAGKAITNLMFHHHNHHVGVPGNDLQFSAAREYEFSCSNTPSNFFATKRHRHNPFFTCAHAPPTFEDEALTVNVVKGVLEMLNNEAVVEAPPAAAFRSPVVRQLRVTDSPFPLGEYEDDKDNHVDKAAEEFIKRFYKELKKQT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0178 188 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 187 - -
Vra9g0178 188 Pfam Cotton fibre expressed protein 166 187 IPR008480 -
Vra9g0178 188 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0178 Vra-Chr9 1217435 1218408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0178 - - gmx:100801941 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0178 9 1217435 1218408 Vra5g2475 5 31701430 31702260 ECH
Vra7g3279 7 52347651 52348976 Vra9g0178 9 1217435 1218408 ECH
Vra1g0483 1 5794308 5795233 Vra9g0178 9 1217435 1218408 ECH
Vra9g0178 9 1217435 1218408 Vra9g0178 9 1217435 1218408 ECH
Vra5g2475 5 31701430 31702260 Vra9g0178 9 1217435 1218408 PCT