Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2475 ATGAAACCTATAGAAATGGAAACCAAGGCACCCATAGTAACCAAGAAGCTCTGGGACATGCTACGTGTCATGTTCTTCATGATGAGGAAAGGTATATCCAAGGGCAAACTCATGATGGACCTCAACGTCATGCTAAAGCGCCGAAGCAAGCTCGCCGGAAAAGCCATTGCAAACCTCATCTCCCACCACCACCACGCCGCCTCACACGACTCCCACCTTCAATTCTCTGCCCCGAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCAGCGCCTTCTCCTTCCCGGCAATAGGGAAGCGCCACCGCCACTTCTTCGCTTGTGTCCACGCGCCCCCCACACACGACGACGACTCCGTCACTATGAACGCAGTGAAGACGGTGTTGGAGATGCTGAACAACGACGTCAAGGTCGAGACGACGTCGTCCCCTGCTCTGCCAGGGTTCGGGCGGAGCCCCATGGTTAGGCAACTGAGGGTGACGGACTCGCCCTTCCCTCTGCGAGATTCCGACCAAGACAACGACCACCAGGTCGATAAGGCGGCGGAAGAGTTCATCAAGAGGTTCTACAAGGAGCTCAAGAAGCAGGATTGA 591 0.5584 MKPIEMETKAPIVTKKLWDMLRVMFFMMRKGISKGKLMMDLNVMLKRRSKLAGKAIANLISHHHHAASHDSHLQFSAPREYEFSCSNTPSAFSFPAIGKRHRHFFACVHAPPTHDDDSVTMNAVKTVLEMLNNDVKVETTSSPALPGFGRSPMVRQLRVTDSPFPLRDSDQDNDHQVDKAAEEFIKRFYKELKKQD* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2475 196 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 6 195 - -
Vra5g2475 196 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 195 - -
Vra5g2475 196 Pfam Cotton fibre expressed protein 175 195 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2475 Vra-Chr5 31701430 31702260 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2475 - - gmx:100802625 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0178 9 1217435 1218408 Vra5g2475 5 31701430 31702260 ECH
Vra7g3279 7 52347651 52348976 Vra5g2475 5 31701430 31702260 ECH
Vra1g0483 1 5794308 5795233 Vra5g2475 5 31701430 31702260 ECH
Vra5g2475 5 31701430 31702260 Vra5g2475 5 31701430 31702260 ECH
Vra5g2475 5 31701430 31702260 Vra9g0178 9 1217435 1218408 PCT