Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0483 ATGGAAATCCAAAAAAGCCCAAGCCCAAGCCCACAGTTGGCGGCGGCGAGGAAGCTCTGGAACGTAGTAAGGATCGTGTTCTTGATGTTGAGAAAAGGCATAGCGAAGAGTAAACACGCCGTTGACTTTAACTTCAACGGCGGCAAACTCGCCGCCGCCAAAGCCATCCTCCACCTCCAGCGCCACCACCACGACGCCGTTTACCCCCACCGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCGTCACCTTCCCCTTCCACGTCACGAAACGCGGCAAACACCGAACCCGGTTCCCCCAGTACGGCGACGCTTCGAGCGTTCAGAAAGTGCTGGAGATTCTGAACAGCAATAACCCGACGGAGGGTTCTCCTCTGGTGAAGAGTCCGATTGGGAAGAAAGTGAGAATCACGGACTCTCCCTTCCCTCTGAAGGAGGAGGACGAGGACAACCAGGTTGACGTGGCGGCTGAGGAGTTCATCAAGAGGTTTTACAAAGACCTCAACTTGCAGCAGAAAATGGCTGCCATTGAATCACCCTACCATTCTAACTTCTGGGGCAGATGA 567 0.552 MEIQKSPSPSPQLAAARKLWNVVRIVFLMLRKGIAKSKHAVDFNFNGGKLAAAKAILHLQRHHHDAVYPHRDYEFSCSNSPAVTFPFHVTKRGKHRTRFPQYGDASSVQKVLEILNSNNPTEGSPLVKSPIGKKVRITDSPFPLKEEDEDNQVDVAAEEFIKRFYKDLNLQQKMAAIESPYHSNFWGR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0483 188 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 15 183 - -
Vra1g0483 188 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 15 183 - -
Vra1g0483 188 Pfam Cotton fibre expressed protein 150 172 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0483 Vra-Chr1 5794308 5795233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0483 - - vra:106768173 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0483 1 5794308 5795233 Vra9g0178 9 1217435 1218408 ECH
Vra1g0483 1 5794308 5795233 Vra5g2475 5 31701430 31702260 ECH
Vra1g0483 1 5794308 5795233 Vra1g0483 1 5794308 5795233 ECH
Vra7g3279 7 52347651 52348976 Vra1g0483 1 5794308 5795233 PCT