Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3279 ATGGAAATTGAGGGAAGCACGCAGGTGGTGGCGAAGAAGGTATGGAACATCATACGTGTGATGTTCTTCATGTTGAGGAAGGGCATAGCGAAGAGCAAAATAATGGCGGAGTTCCATCTCATGCTGAAGCGTGGGAAGAAAGCCTTGGTGAACAACCTCATGCTCAACCACCACTACATCATGGCCTCTTTCACCTGTCGCTCCAACCACAACCACGCCACCTTCATCTCCCCACGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCATCCCCTTCCACGCCGTCAAACGCACCCACAAAAACCACCGCTTCTCCAAACCCTCCCAACAATACCACGACGTTTCCACCCTCTCCGCCGTTCAGAAGGTTCTCGAAATTCTCAACAACGACGCCAACAACTCACCCTTCCCCGCCTTCGGAAAAAGCCCCGTTGGCAAACAACTCAGAGTCACCGACTCACCCTTCCCTCTCAAAGACGACGGGGATAGCCAAGTCGACGTCGCAGCCGAAGAATTCATTAAGAAGTTCTACAAAGATCTCAACTTGCAGAAAAAAATGGCATATCTTGAGTCCCCATATCATACTTCCTGGAGCAGATGA 603 0.5158 MEIEGSTQVVAKKVWNIIRVMFFMLRKGIAKSKIMAEFHLMLKRGKKALVNNLMLNHHYIMASFTCRSNHNHATFISPRDYEFSCSNSPAIPFHAVKRTHKNHRFSKPSQQYHDVSTLSAVQKVLEILNNDANNSPFPAFGKSPVGKQLRVTDSPFPLKDDGDSQVDVAAEEFIKKFYKDLNLQKKMAYLESPYHTSWSR* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3279 200 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 3 196 - -
Vra7g3279 200 Pfam Cotton fibre expressed protein 164 190 IPR008480 -
Vra7g3279 200 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3279 Vra-Chr7 52347651 52348976 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3279 - - gmx:100305871 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3279 7 52347651 52348976 Vra9g0178 9 1217435 1218408 ECH
Vra7g3279 7 52347651 52348976 Vra5g2475 5 31701430 31702260 ECH
Vra7g3279 7 52347651 52348976 Vra7g3279 7 52347651 52348976 ECH
Vra7g3279 7 52347651 52348976 Vra1g0483 1 5794308 5795233 PCT