Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0164 ATGGCATACAATGCGTTTTTTCTCACGGTTATTGCTGTTGTTACAACATTAGCATCAGTTACTCTTGCTGAACCTGTTCCTGTTGTACCTATCCTCGATGTTTCTTCCCTCAACCGAAGCACTTTTCCACCAGGATTCCTTTTTGGGACAGCTTCTGCCGCTTACCAGTATGAAGGTGCGGCGAAAGAAGGTGGCAAAGGGCCGAGTGTATGGGATACTTTCACCCATAAACATCCAGAACTGATACAAGACAGAAGTAATGGAGATGTTGCCAATGATCAATATCACCGGTATAAGGAAGACGTTGGAATCATGAAATATATGAACTTGGATGCATACCGATTCTCTATTTCTTGGCCAAGAATTCTTCCAAAAGGAAAGCTTAGTGGAGGAATAAACCAAGAAGGAGTCAAATATTACAACAACCTCATCAACGAACTATTAGCTTATGGTATTGAACCATTTGTCACCCTCTTCCATTGGGATCTTCCTCAGACTTTAGAAGATGAGTATGGTGGCTTCCTAAGTCCTCGCATTATAAACGACTTTCAAGATTACGCAGAAGTTTGCTTCAAAGAATTTGGAGACAGAGTGAAGTATTGGATTACTTTAAACGAGCCATGGACTTATAGTACATTTGGCTATGCAACTGGAATCATGCCACCAAATCGATGTTCTAAATGGTTAGATCCAAAATGTGTTCATGGTGATTCTGGGAAAGAACCTTATTTAGTTTCACATCACCTTCTTCTTGCTCATGCAGCCACTGTCCAAGTTTACAGAAAAAAATATCAGGTGTATCAAAAAGGAGTAATAGGCATAACCCTTGTGTCTAATTGGTTTGAACCATTGTCAGATAACAAATTAGATAAAAGTGCTTCTGAGCGAGCTCTAGATTTCATGCTGGGATGGTTTGTGGAACCATTAACATCAGGAAAATATCCGAAAAGCATGCGTTCTCTTGTTGGTAATCGATTACCAGAATTCTCCCAAGAACAAATCAAACTCGTGAATGGTTCATTTGATTTTATTGGATTAAACTATTACACCTCTAACTATGCTACCCATGCACCTCGGCTAGGCACTGTCAAACCTAATTATAATACAGATGCCAATACCAATCTTACAACTGAACGCAATGGGATTCCAATAGGTCCAACGGCTGCATCAAGCTGGTTGTATGTGTATCCGCGAGGCATTAGAGAATTATTGTTGTACACTAAACAAAAGTACAACAATCCATTAATTTACATAACTGAAAATGGTGTTGATGAGTTCAATGATCCAACGCTATCGTTGGAAGAGTCTCTTCTAGATACGTTGAGGATAGACTATCATTATCGTCATCTATTTTATCTTCATTCAGCAATTAGGGATGGCGTAAATATAAAAGGATATTTTGCATGGTCATTGCTTGACAACTTTGAATGGAACAATGGCTATACAGTGAGATTCGGAATCAACTTTGTGGATTACAAGAATGGCTTTAAGCGATATCAAAAACTCTCTGCAAAATGGTTTAGGAATTTTCTAAAAACATACTGA 1545 0.3871 MAYNAFFLTVIAVVTTLASVTLAEPVPVVPILDVSSLNRSTFPPGFLFGTASAAYQYEGAAKEGGKGPSVWDTFTHKHPELIQDRSNGDVANDQYHRYKEDVGIMKYMNLDAYRFSISWPRILPKGKLSGGINQEGVKYYNNLINELLAYGIEPFVTLFHWDLPQTLEDEYGGFLSPRIINDFQDYAEVCFKEFGDRVKYWITLNEPWTYSTFGYATGIMPPNRCSKWLDPKCVHGDSGKEPYLVSHHLLLAHAATVQVYRKKYQVYQKGVIGITLVSNWFEPLSDNKLDKSASERALDFMLGWFVEPLTSGKYPKSMRSLVGNRLPEFSQEQIKLVNGSFDFIGLNYYTSNYATHAPRLGTVKPNYNTDANTNLTTERNGIPIGPTAASSWLYVYPRGIRELLLYTKQKYNNPLIYITENGVDEFNDPTLSLEESLLDTLRIDYHYRHLFYLHSAIRDGVNIKGYFAWSLLDNFEWNNGYTVRFGINFVDYKNGFKRYQKLSAKWFRNFLKTY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0164 514 SUPERFAMILY (Trans)glycosidases 29 512 IPR017853 -
Vra4g0164 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Vra4g0164 514 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 1 513 - -
Vra4g0164 514 Pfam Glycosyl hydrolase family 1 39 512 IPR001360 GO:0004553|GO:0005975
Vra4g0164 514 PANTHER GLYCOSYL HYDROLASE 1 513 IPR001360 GO:0004553|GO:0005975
Vra4g0164 514 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Vra4g0164 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Vra4g0164 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Vra4g0164 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Vra4g0164 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Vra4g0164 514 Gene3D Glycosidases 24 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0164 Vra-Chr4 4467540 4473719 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0164 6 511 Glycoside Hydrolase AT5G44640 52.071 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0164 - K01188 gmx:100811884 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0164 4 4467540 4473719 Vra4g0164 4 4467540 4473719 ECH
Vra4g0164 4 4467540 4473719 Vra2g0514 2 3969162 3972360 ECH
Vra4g0164 4 4467540 4473719 Vra2g0517 2 4017549 4021844 PCT
Vra2g0516 2 4005714 4010854 Vra4g0164 4 4467540 4473719 PCT