Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0514 ATGGCCTTCTACAGCTCTCTCTTTCTGGGCCTCTTTGCTCTTCTTCTTGTTAGATCTTCCAAAGTTACATGCGAAGAAACAGTTTCAGTTTCACCAACTATTGACATTTCAATCAATCGGAACACTTTCCCTCAAGGGTTCATTTTTGGAGCTGGATCTTCCTCCTACCAGTTCGAAGGTGCAGCAATGGAAGGTGGTAGAGGAGCAAGTGTATGGGATACTTTCACCCATAAATATCCAGCTAAGATCCAGGATAGAAGCAACGGAGACGTGGCCATTGACTCGTACCATCATTACAAGGAAGATGTTCAAATGATGAAGGATGCGAATTTGGATTCATACAGATTTTCCATATCTTGGTCAAGGATTCTCCCCAAAGGAAAGCTGAGTGGAGGAATAAATCAAGAAGGAATAAACTATTACAACAACCTTATCAATGAGCTGGTGGCTAATGGTATAAAACCATTTGTGACTATTTTTCATTGGGATCTTCCTCAAGCACTGGAAGATGAGTATGGAGGCTTTTTAAGTCCACTGATAGTGAAGGATTTTCGAGATTATGCAGAACTTTGCTTCAAGGAATTTGGTGATAGGGTGAAGTATTGGGTTACATTGAATGAGCCTTGGAGTTACAGCCAGAATGGCTATGCAAATGGACAAATGGCACCAGGTCGCTGCTCTGCATGGATGAATTCAAATTGCACTGGTGGTGATTCTTCAACTGAGCCATATTTGGTCACGCATCACCAACTTCTTGCTCATGCAGCAGCTGTTCGTCTATACAAGACCAAATATCAGACTTCTCAAGAGGGTGTGATAGGCATAACCTTGGTGGCTAATTGGTTTTTGCCACTCAGAGATACCAAAGCTGATCAAAAGGCTGCCGAAAGAGCAATTGACTTCATGTATGGATGGTTTATGGATCCATTAACTTACGGAGACTATCCAAAAAGTATGAGATCACTTGTGAGAACAAGGTTGCCAAAGTTTACTGCAGAGCAAGCAAGACTTCTTATTGGTTCATTCGATTTTATTGGCCTAAACTATTACTCTACAACATATTCCTCTGATGCACCTCAACTGAGCAATGACAACCCTAGCTACTTAACCGATTCTCTTGTCACTGCTGCATTTGAACGTGATGGGAAACCTATTGGAATCAAGATTGCTTCTGATTGGTTATACGTTTATCCTAGAGGAATTCGTGATCTCGTGTTATATACCAAGGAAAAATACAACAATCCTTTGATGTACATCACAGAGAATGGTGTCAATGAGTATAATGAACCCTCCTTATCACTTGAAGAATCTCTTATGGACACTTTCAGAATAGATTATCATTATCGTCATCTCTATTATCTTCTATCCGCAATTAGGAATGGAGCAAATGTGAAGGGATATTACGTGTGGTCTTTCTTCGACAATTTTGAATGGGCTTCGGGTTATACATCACGATTCGGAATGATCTTCATAGATTACAAAAACAGTTTGAAAAGATATCCAAAACTATCAGCAACGTGGTACAAGAACTTCCTCAAGAAAGAAACCAAACTTTATAGCTCTAGTAAATAA 1572 0.4001 MAFYSSLFLGLFALLLVRSSKVTCEETVSVSPTIDISINRNTFPQGFIFGAGSSSYQFEGAAMEGGRGASVWDTFTHKYPAKIQDRSNGDVAIDSYHHYKEDVQMMKDANLDSYRFSISWSRILPKGKLSGGINQEGINYYNNLINELVANGIKPFVTIFHWDLPQALEDEYGGFLSPLIVKDFRDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGQMAPGRCSAWMNSNCTGGDSSTEPYLVTHHQLLAHAAAVRLYKTKYQTSQEGVIGITLVANWFLPLRDTKADQKAAERAIDFMYGWFMDPLTYGDYPKSMRSLVRTRLPKFTAEQARLLIGSFDFIGLNYYSTTYSSDAPQLSNDNPSYLTDSLVTAAFERDGKPIGIKIASDWLYVYPRGIRDLVLYTKEKYNNPLMYITENGVNEYNEPSLSLEESLMDTFRIDYHYRHLYYLLSAIRNGANVKGYYVWSFFDNFEWASGYTSRFGMIFIDYKNSLKRYPKLSATWYKNFLKKETKLYSSSK* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0514 523 ProSitePatterns Glycosyl hydrolases family 1 active site. 417 425 IPR018120 -
Vra2g0514 523 PRINTS Glycosyl hydrolase family 1 signature 341 355 IPR001360 GO:0004553|GO:0005975
Vra2g0514 523 PRINTS Glycosyl hydrolase family 1 signature 417 425 IPR001360 GO:0004553|GO:0005975
Vra2g0514 523 PRINTS Glycosyl hydrolase family 1 signature 440 451 IPR001360 GO:0004553|GO:0005975
Vra2g0514 523 PRINTS Glycosyl hydrolase family 1 signature 461 478 IPR001360 GO:0004553|GO:0005975
Vra2g0514 523 PRINTS Glycosyl hydrolase family 1 signature 485 497 IPR001360 GO:0004553|GO:0005975
Vra2g0514 523 Pfam Glycosyl hydrolase family 1 40 515 IPR001360 GO:0004553|GO:0005975
Vra2g0514 523 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
Vra2g0514 523 SUPERFAMILY (Trans)glycosidases 38 513 IPR017853 -
Vra2g0514 523 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 7 519 - -
Vra2g0514 523 PANTHER GLYCOSYL HYDROLASE 7 519 IPR001360 GO:0004553|GO:0005975
Vra2g0514 523 Gene3D Glycosidases 28 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0514 Vra-Chr2 3969162 3972360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0514 8 517 Glycoside Hydrolase AT5G44640 52.838 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0514 - K01188 gmx:100813623 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0514 2 3969162 3972360 Vra2g0514 2 3969162 3972360 ECH
Vra4g0164 4 4467540 4473719 Vra2g0514 2 3969162 3972360 ECH