Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0517 ATGAACAAGGATATGATATTCAGTGGCTATCAATTTCTTCTCCATCTTGGAGTCTTCACTCTCCTTGTAACCTTTTCCATTACAATCACACACGCTGTTCCGCCCATTCTTGATGTTTCTTCTCTTAATAGGACCAGTTTTCCCCCAGCTTTCATCTTCGGCACTGCCTCCTCAGCCTACCAGTACGAAGGTGCTGCAAATGAAGGAGGTAGAGGGCCAAGCATATGGGATACCTTTTCTCATAAACATCCAGAACATATATCTGATAGAAGCAATGGAGATGTAGCTGTCGATCAATATCATCGTTATAAGGAAGATGTTGGGATCATGAAGTATATGAACACTGATGCGTACAGATTCTCTATCTCGTGGTCAAGGATATTGCCAAAAGGAAACATTAGCTCGGATATAAACCAAGAAGGAATCAAATATTACAACAATCTCATCAACGAACTGCTGGCTAATGATATTCAGCCATTTGTGACTCTTTTCCATTGGGATCTTCCCCAAGCCTTAGAAGATGAATACGGTGGATTCTTAAGCCCTCGTATTGTAAACGATTTTCAAGACTACGCAGAGCTATGCTTCAAGGAATTTGGAGATAGAGTGAAACATTGGATTACTTTTAATGAGCCATGGAGTTACAGTATGGGCTCAGAGCCCTACATGAGCTCACACTACCAACTGCTAGCTCATGCAGCAGCTGTCAAAGTTTATAAAACCAATTATCAGGCATTTCAAAAGGGTTTGATAGGCATCAGCTTAAATTGTCACTGGTTTATTCCGTTCTCAAATGACACATTAGATGATCGAGCTGCCAAACGAGCTCTTGATTTCATGTTTGGATGGTATATGCAACCACTTACAAGAGGAAAGTATCCAAAAACCATGCATTCTCTGCTGGGAAGCCGATTACCAAACTTCACAGAAGAGCAATCCAAGCTACTTATTGGCTCGTTTGATTTTATTGGACTCAATTACTANACAACTAATTATGCTGCTCACATATCCCAGCCAATTAATAACTCAGGCAATACTAGCTATTTCCAAGATACTAGAGTCAATTTTACAACTGAACGTAACGGGTCACCAATTGGACCAAGGGCTGCTTCATCTTGGCTATATGTTTATCCAAGGGGACTTAGAGAACTGTTGTTGTACATCAAGATTAAGTATAAAAACCCTGTAATTTACATAACAGAAAATGGGATGGACGAGACCAATGATCCAACACTGTCACTTGAAGAGGCACTGATGGATACTTACAGAATTGACTACTTCTATCGCCATCTTTATTACATTTCAACTGCATTAAAGGATGGGGTGAAAGTACATGGATACTTTGCATGGTCGCTTCTGGATAACTTCGAATGGGGTGCTGGCTACACCTTGCGCTTTGGAATTAACTTCATCGATTACAAGGATAATTTGAAAAGACACCATAAGCTCTCTGCGCATTGGTTCAGGAATTTTCTTCGAAAACAATAG 1488 0.4026 MNKDMIFSGYQFLLHLGVFTLLVTFSITITHAVPPILDVSSLNRTSFPPAFIFGTASSAYQYEGAANEGGRGPSIWDTFSHKHPEHISDRSNGDVAVDQYHRYKEDVGIMKYMNTDAYRFSISWSRILPKGNISSDINQEGIKYYNNLINELLANDIQPFVTLFHWDLPQALEDEYGGFLSPRIVNDFQDYAELCFKEFGDRVKHWITFNEPWSYSMGSEPYMSSHYQLLAHAAAVKVYKTNYQAFQKGLIGISLNCHWFIPFSNDTLDDRAAKRALDFMFGWYMQPLTRGKYPKTMHSLLGSRLPNFTEEQSKLLIGSFDFIGLNYXTTNYAAHISQPINNSGNTSYFQDTRVNFTTERNGSPIGPRAASSWLYVYPRGLRELLLYIKIKYKNPVIYITENGMDETNDPTLSLEEALMDTYRIDYFYRHLYYISTALKDGVKVHGYFAWSLLDNFEWGAGYTLRFGINFIDYKDNLKRHHKLSAHWFRNFLRKQ* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0517 495 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 51 65 IPR033132 -
Vra2g0517 495 Pfam Glycosyl hydrolase family 1 45 494 IPR001360 GO:0004553|GO:0005975
Vra2g0517 495 PRINTS Glycosyl hydrolase family 1 signature 319 333 IPR001360 GO:0004553|GO:0005975
Vra2g0517 495 PRINTS Glycosyl hydrolase family 1 signature 397 405 IPR001360 GO:0004553|GO:0005975
Vra2g0517 495 PRINTS Glycosyl hydrolase family 1 signature 420 431 IPR001360 GO:0004553|GO:0005975
Vra2g0517 495 PRINTS Glycosyl hydrolase family 1 signature 441 458 IPR001360 GO:0004553|GO:0005975
Vra2g0517 495 PRINTS Glycosyl hydrolase family 1 signature 465 477 IPR001360 GO:0004553|GO:0005975
Vra2g0517 495 Gene3D Glycosidases 27 494 - -
Vra2g0517 495 SUPERFAMILY (Trans)glycosidases 33 493 IPR017853 -
Vra2g0517 495 PANTHER GLYCOSYL HYDROLASE 8 495 IPR001360 GO:0004553|GO:0005975
Vra2g0517 495 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 8 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0517 Vra-Chr2 4017549 4021844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0517 19 495 Glycoside Hydrolase AT5G44640 50.988 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0517 - K01188 var:108339449 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0164 4 4467540 4473719 Vra2g0517 2 4017549 4021844 PCT