Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0516 ATGATAAAGCAGAGAGCAGAAGCACTTACCCGAATTACGATGATGGCATTGCAGTTGGACTTGTTTCCGTTACTCTGCGTTTTGTCTCTTTTTGTTACCTCCTTCGTCAAAGTCACTCATTCCAAGGCCATTTCATCCGTTCATGACGCTTCATTTCTCAACCGGAGCAGTTTTCCCCCAGGCTTTGTTTTCGGAGCAGCATCCTCAGCATACCAGTATGAAGGGGCTGCAAGGGAAGGTGGAAGAGGGCCCAGTATATGGGATACTTTCACTCATAAATACCCACAAAAAATAAAAGACGGAAGTAATGGAGATGTAGCAGACGACTCATATCATCGGTACAAGGAGGATATTGGAATCATGAAGTACATGGATTTGGATGCTTATAGATTTTCCATTTCTTGGTCTAGGATTCTACCCAAAGGAAAGCTTAGTGCAGGTGTAAACCATGAAGGAATAAACTACTACAACAACCTTATCAGCGAGCTAATGGCAAATGGTCTGCAACCATATGTGACCCTTTTTCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGCGGTTTCTTAAACCCTCATATTGTAGATGATTTTAGGGACTATGCTGAAGTTTGCTTCAAGGAATTTGGTGATAGGGTAAAACATTGGATTACTTTAAATGAACCAAGGAGTGTGAGCAAGAATGGCTATGCAAATGGTAGGTTTGCACCTGGTCGGTGTTCTGATTGGTTAAAACTGAACTGCACAGGTGGTGATTCCGGAACCGAGCCCTACTTGACTTCACACTACCAACTTCTTGCTCATGCTGCTGCTGCCAAACTGTATAAGACCAAGTATCAGGCATCTCAAAAGGGTTTAATAGGGATTACATTGAATTCTGACTGGTATGTTCCGGTTTCAAAACAGAAATCTGATCGAGATGCTGCACGTCGGGGCCTTGACTTCATTTTTGGATGGTCTATGAGACCACTCACTAAAGGTGAGTATCCAAAGAGCATGCGATCTATGTTGGGGAATCGGCTACCAAAGTTCACCATAGAAGAGTCCAGGCAACTCAAAGGGTCATTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATGCTGCCCATGCACCTCACCAACTTGTTGTCAGACCATCCTTACAAACTGATTCTCTTGTTAATGTTACAAATCAGCATAATGGCAAGCTCCTTGGTCCAATGGCTGCTTCTAACTGGTTGTGCATTTATCCACGAGGATTCCGACGACTGTTGCTTTTCATCAAGAAGCATTACAACAACCCCGTAATTTACATTACTGAAAACGGTTATGACGAGTTTGACGATCCAACACTTTCACTTGAAGAAAGCCTTCTAGATACTTACAGAGTTGATTACATATACCGACATCTTTATTATCTTCAAACTGCAATCAAGTATGGAACCATTTGTGACCATTTCTCATTGGAGGAAGAGTACGGTGGCTTTTTAAGTCGTCACATTGTATGA 1494 0.425 MIKQRAEALTRITMMALQLDLFPLLCVLSLFVTSFVKVTHSKAISSVHDASFLNRSSFPPGFVFGAASSAYQYEGAAREGGRGPSIWDTFTHKYPQKIKDGSNGDVADDSYHRYKEDIGIMKYMDLDAYRFSISWSRILPKGKLSAGVNHEGINYYNNLISELMANGLQPYVTLFHWDVPQALEDEYGGFLNPHIVDDFRDYAEVCFKEFGDRVKHWITLNEPRSVSKNGYANGRFAPGRCSDWLKLNCTGGDSGTEPYLTSHYQLLAHAAAAKLYKTKYQASQKGLIGITLNSDWYVPVSKQKSDRDAARRGLDFIFGWSMRPLTKGEYPKSMRSMLGNRLPKFTIEESRQLKGSFDFLGLNYYSSFYAAHAPHQLVVRPSLQTDSLVNVTNQHNGKLLGPMAASNWLCIYPRGFRRLLLFIKKHYNNPVIYITENGYDEFDDPTLSLEESLLDTYRVDYIYRHLYYLQTAIKYGTICDHFSLEEEYGGFLSRHIV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0516 497 Pfam Glycosyl hydrolase family 1 56 476 IPR001360 GO:0004553|GO:0005975
Vra2g0516 497 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 62 76 IPR033132 -
Vra2g0516 497 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 42 476 - -
Vra2g0516 497 Gene3D Glycosidases 42 492 - -
Vra2g0516 497 PRINTS Glycosyl hydrolase family 1 signature 356 370 IPR001360 GO:0004553|GO:0005975
Vra2g0516 497 PRINTS Glycosyl hydrolase family 1 signature 432 440 IPR001360 GO:0004553|GO:0005975
Vra2g0516 497 PRINTS Glycosyl hydrolase family 1 signature 455 466 IPR001360 GO:0004553|GO:0005975
Vra2g0516 497 PANTHER GLYCOSYL HYDROLASE 42 476 IPR001360 GO:0004553|GO:0005975
Vra2g0516 497 SUPERFAMILY (Trans)glycosidases 48 477 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0516 Vra-Chr2 4005714 4010854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0516 14 482 Glycoside Hydrolase AT5G42260 51.592 1.20e-173 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0516 - K01188 gmx:100801874 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0516 2 4005714 4010854 Vra4g0164 4 4467540 4473719 PCT