Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04253 ATGTCTTCTGCTGGTGTAACTACTCTTAGTCCTGTTTCGAGGGAGACATTGTTGTCTCCGACAAATGGGTTATGTAATCCATTGCACTTGTCTGTGGATCAGCATGAGTTTATCTTCGTGTATCTTTCGTATTCGGGGTCTATGTCTCCTATGCGTGTTCTGCCCTCTGATACAGTTGAATCTGTGAAACTCAAAATCCAGAGGAATGAGGGTGTGACAAACAAACAGAAGTTGGTTTGTAATGGGCGTGAGTTGTCGCGGAGCAATTCTCTGCTTAAAGACTATGGAGTTACGGAAGGAAATGTTTTGCATTTGGTGATTCGGCTGACGGATCTTCAGACTATTAGTGTGAAGACTTGTTCTGGGAAGGAGTTTTCGTTTCAGGTTGAGAGATGCAAGGATGTTGGATATGTGAAGCAACAGATTGCGAAAAGGGAGAAAGAGTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGAAGCTTATTGATGATATCTGTTGCAAATATAATGATGCAGTGATACATCTTTTTGTTAGGACAAAATATGCGGATGTTAGTACAGGACTTGATGAGTTGTCCATCGAAGCAAAAGAATTGAATGATGCTAATGAAAGTGACTATGCGAGTAAATATGAAGATGCGGCAAGGGAGTATGAAGCTATCAAGCAGATTATGTCGAGGAAAGCTCTTGATAGAGGTCTTCTTTTGGAGCCGGTCATTGTTAACCCTAAAGTTGAATTAACTTCAGAGGTTTGGGATATGATAAACTCTACATATGATGGGCTAGATAGCGGAAATTCTCCAATCAGATCGTCAGAAGGCACAGGTGGGGCTTACTTTATGCTAGATTCAACCGGGCAAAAATATATATCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTATGAATAACCCTAGAGGCTTACCTTTGTCATTAGATGGCGAAGGCTTAAAAAAGGGTACAAGAGTTGGCCAAGGAGCTTTCAGGGAAGTTGCTGCTTATATTTTGGACCATCCAATGAGTGGCCGCCGATCATTATTTGGTGATGGGAAGGGCTTTGCCGGTGTTCCGCCGACTGTTATGGCGAAGTCCTTGCATAAAGGATATAACCATCCAGAGGGTTTGACTGCTAAATTTGGTTCCTTGCAAATGTTCATGGAGAATAATGGGAGTTGCGAGGATATGGGACCTGGTGCTTTTCCGGTGAAGGAAGTGCATAAAATTACTGTGCTTGACATGAGACTTGCTAATGCAGACAGGCATGCTGGGAATATTTTGATTGGCAGAGAGAAGGAAAATGATCAGGCTGTTTTGATTCCAATCGATCATGGATACTGCCTTCCTACTAGTTTTGAAGACTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCGTACTCTCCAGAGATCATCGAGTACATAGAGTCACTTGATGCTGAAGAAGATATTGCCCTTCTGAAGTTTCACGGATGGGATCTGCCACTTGAATGCGCGCGTACTCTCCGAATCTCGACCATGCTTCTGAAAAAAGGAGTGGAAAAAGGGATGACCCCTTTCGCCATTGGAAGCCTAATGTGCCGAGAATCCTTGAACAACGAGTCTGTGATTGAAGGAATTGTTAAAACAGCACATGATTCTGTTCTTCCTGGTACTAGTGAAGCTACTTTCATGGACGCCGTTTCTGAAATTATAGACCAACATCTTGAGAAAGTCACCAGCAATTATAATTCTTAA 1767 0.4295 MSSAGVTTLSPVSRETLLSPTNGLCNPLHLSVDQHEFIFVYLSYSGSMSPMRVLPSDTVESVKLKIQRNEGVTNKQKLVCNGRELSRSNSLLKDYGVTEGNVLHLVIRLTDLQTISVKTCSGKEFSFQVERCKDVGYVKQQIAKREKEFADPEQQEVVCNGELLEDQKLIDDICCKYNDAVIHLFVRTKYADVSTGLDELSIEAKELNDANESDYASKYEDAAREYEAIKQIMSRKALDRGLLLEPVIVNPKVELTSEVWDMINSTYDGLDSGNSPIRSSEGTGGAYFMLDSTGQKYISVFKPIDEEPMAMNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYILDHPMSGRRSLFGDGKGFAGVPPTVMAKSLHKGYNHPEGLTAKFGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGREKENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIEYIESLDAEEDIALLKFHGWDLPLECARTLRISTMLLKKGVEKGMTPFAIGSLMCRESLNNESVIEGIVKTAHDSVLPGTSEATFMDAVSEIIDQHLEKVTSNYNS 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04253 588 Pfam Phosphatidylinositol 3- and 4-kinase 282 531 IPR000403 -
Vivi7g04253 588 SUPERFAMILY Ubiquitin-like 110 188 IPR029071 -
Vivi7g04253 588 SUPERFAMILY Ubiquitin-like 29 109 IPR029071 -
Vivi7g04253 588 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Vivi7g04253 588 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 47 557 IPR044571 -
Vivi7g04253 588 SMART ubq_7 38 108 IPR000626 GO:0005515
Vivi7g04253 588 SMART ubq_7 113 187 IPR000626 GO:0005515
Vivi7g04253 588 Gene3D - 114 195 - -
Vivi7g04253 588 CDD Ubl_ubiquitin_like 115 185 - -
Vivi7g04253 588 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Vivi7g04253 588 Pfam Ubiquitin family 44 109 IPR000626 GO:0005515
Vivi7g04253 588 ProSiteProfiles Ubiquitin domain profile. 38 108 IPR000626 GO:0005515
Vivi7g04253 588 Gene3D - 35 113 - -
Vivi7g04253 588 SUPERFAMILY Protein kinase-like (PK-like) 419 584 IPR011009 -
Vivi7g04253 588 PRINTS Ubiquitin signature 47 67 IPR019956 -
Vivi7g04253 588 PRINTS Ubiquitin signature 89 110 IPR019956 -
Vivi7g04253 588 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 273 566 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04253 Vivi-Chr7 110999631 111002352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04253 1 585 Acyl Lipid Metabolism Gene Families AT5G24240 54.454 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04253 - - gmx:100815111 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04253 7 110999631 111002352 Vivi3g02853 3 47483516 47486442 ECH
Vivi7g04253 7 110999631 111002352 Vivi7g04253 7 110999631 111002352 ECH
Vivi2g03970 2 152372345 152375656 Vivi7g04253 7 110999631 111002352 ECH
Vivi6g05267 6 157356514 157359512 Vivi7g04253 7 110999631 111002352 PCT