Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02853 ATGGCTTGTTTGACAGTTAGTCCAATGTATGAAAATGGTGAATATACTAGTTGGTTTAGTCGTCATGCAAGGGATTCAATTTTGATTTACCTAACTGTTGGTGGATCGGTGATCCCCATGCATATTATGGAGACGGATTCCATTGCTTCGGTGAAGCTGAGAATTCAAACCTTTAGAGGATTTTTTGTAAAGAAATCGAAACTGGTTTTTGAAGGGAAGGAATTGGCTCATGACAAATCATGTGTCCGTGATTATGGTGTTGCTGATGGGAATGTATTGCATTTAGTTCTAAGGTTTTCTGATCTTAAAGCTATTACAGTTAGGACTTTATCTGGTAAGGAGTTCGGGTTTTGTATCGAGAAGACTAGGAATGTGGGTTATGTGAAGCAGCAGATTGCAAGGAAAGGGCAAGGATTCTTCGATCTTGCGGATCAAGAATTGGTATGGAAGGGCGAGGCACTTGATGACCAAAGACTTATTGAGGACATCTGTAAGGATAATGATGCTGTGATTCATTTGTTGGTCAGGATATCAGATGCCAAGGTAAGAACTAAACCAGTAGAAAAAGATTTTGAATTATCAATTGAGGCATCGTCCGCACCTGATACAGTACAAAATTTAGCTGCAGACCAGCTAGGGCCACTGGTCCCGAAAAGGAACCGGTTGACTAGTGAATTTCTTTTGGAACCAATTTTTAAGAATTCCAATATCAAAATTCCACCACTGATCCAGGAACTAGTTAAAATTACATTAGAGGGGTTAGAGAAAGGCCGTAAGCCAATTCGATCATCAGAGGGATCAGGAGGAGCTTATCTCATGCAAGATCCATCTGGCTTAAAGTATGTGTCAGTTTTCAAGCCTACTGATGAGGAGCCAATGGCAATTAATAATCCTCGGGGCTTACCTATCTCAGAGGATGGTGAAGGTTTAAAGAAAGGAACACGAGTAGGGCAAGGTGCGTTGAGAGAAGTTGCAGCTTACATCTTGGATCATCCGAGGAAAGAACCTCGCTCATATCATAACAATGAGGAGCAAGGGTTTGCTGGAGTTCCGCCTACAGTTATGGTCAAATGCATGCATGAAGGGTTCCATCATCCTGAAGGTTACAAGAATGTTTCAAGAAATGTTAAAATAGGATCACTTCAGATGTTTATGAGGAACATTGGAAGCTGTGAAGACATGGGCCCTAGTGCATTTCCGGTGAAAGAGGTACACAAGATCTCTGTGCTGGACATCAGGTTGGCAAATGCAGATAGACATGCTGGGAACATTTTGGTTTCCAAGAACGGTGAAGATGATCCAACTGTCCTTATTCCAATTGATCATGGCTATTGTCTGCCTGAGAGTTTTGAAGACTGCACTTTTGACTGGTTATATTGGCCACAAGCTCAAGAACCTTACTCTTCAGACACCATAGAGTACATAAAATCTTTGGATGCAGAAGAAGATATCAAGCTTTTGAAGTCTCATGGATGGGAACTTCCTCCTGAATGTGCCCGGATCCTTCGTATATCAACCATGCTGCTTCAGAAAGGTGCAGAGAAAGGACTCACTCCTTTCACCATAGGTTGCATCATGTGTAGAGAAACACTGAAGAAAAAGTCTGTCATTGAGCAGATTATTCAGAAAGTGGAAGAGGCTGCACTTCCCGGAACAAGCGAAGCTGCATTTCTTGATCTTGTTTCTGTGATCATGGATAATCATTTAGAAGGCCTATTCCCATGA 1725 0.418 MACLTVSPMYENGEYTSWFSRHARDSILIYLTVGGSVIPMHIMETDSIASVKLRIQTFRGFFVKKSKLVFEGKELAHDKSCVRDYGVADGNVLHLVLRFSDLKAITVRTLSGKEFGFCIEKTRNVGYVKQQIARKGQGFFDLADQELVWKGEALDDQRLIEDICKDNDAVIHLLVRISDAKVRTKPVEKDFELSIEASSAPDTVQNLAADQLGPLVPKRNRLTSEFLLEPIFKNSNIKIPPLIQELVKITLEGLEKGRKPIRSSEGSGGAYLMQDPSGLKYVSVFKPTDEEPMAINNPRGLPISEDGEGLKKGTRVGQGALREVAAYILDHPRKEPRSYHNNEEQGFAGVPPTVMVKCMHEGFHHPEGYKNVSRNVKIGSLQMFMRNIGSCEDMGPSAFPVKEVHKISVLDIRLANADRHAGNILVSKNGEDDPTVLIPIDHGYCLPESFEDCTFDWLYWPQAQEPYSSDTIEYIKSLDAEEDIKLLKSHGWELPPECARILRISTMLLQKGAEKGLTPFTIGCIMCRETLKKKSVIEQIIQKVEEAALPGTSEAAFLDLVSVIMDNHLEGLFP 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02853 574 ProSiteProfiles Ubiquitin domain profile. 25 98 IPR000626 GO:0005515
Vivi3g02853 574 SUPERFAMILY Protein kinase-like (PK-like) 408 572 IPR011009 -
Vivi3g02853 574 Pfam Phosphatidylinositol 3- and 4-kinase 266 522 IPR000403 -
Vivi3g02853 574 SUPERFAMILY Ubiquitin-like 100 179 IPR029071 -
Vivi3g02853 574 Pfam Ubiquitin family 105 176 IPR000626 GO:0005515
Vivi3g02853 574 Pfam Ubiquitin family 33 99 IPR000626 GO:0005515
Vivi3g02853 574 SUPERFAMILY Ubiquitin-like 32 99 IPR029071 -
Vivi3g02853 574 Gene3D - 104 193 - -
Vivi3g02853 574 SMART ubq_7 103 176 IPR000626 GO:0005515
Vivi3g02853 574 SMART ubq_7 27 98 IPR000626 GO:0005515
Vivi3g02853 574 Gene3D - 21 101 - -
Vivi3g02853 574 CDD Ubl_ubiquitin_like 105 174 - -
Vivi3g02853 574 ProSiteProfiles Ubiquitin domain profile. 103 180 IPR000626 GO:0005515
Vivi3g02853 574 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 36 547 IPR044571 -
Vivi3g02853 574 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 257 556 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02853 Vivi-Chr3 47483516 47486442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02853 19 570 Acyl Lipid Metabolism Gene Families AT5G24240 62.681 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02853 - - gmx:100812724 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04253 7 110999631 111002352 Vivi3g02853 3 47483516 47486442 ECH
Vivi3g02853 3 47483516 47486442 Vivi3g02853 3 47483516 47486442 ECH