Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05267 ATGTCATCTGCTGGTGTCACTACTCTTAGTCCAGTGGATCCTACTGAACCATTGTTGTCTCCAAATGCGTCTCATTTTCCGTCGTCCTTAGAGGAAAACTCCATTTTCATATTTCTCTCGTTTTCGGGTTTGTTGACGCCTATTCGTGTTATGAAATGGGATACTATTGAGTCTGTTAAATTCAAAATTCAGAGGTGTGAGAGTATTCCGTTTTTAACTAACAAACAGAAGTTGGTTTACGCTGGTCGTGAGCTTGCTCGGAGTGATACTTTACTCAAGGACTACGGAGTTACCGATGGGAATGTTTTGCATTTGATAATCAAACTTTCAGATCTTCAGCTCATCAATGTGAAAACATCTTCTGGGAAGGAGTTTTCTTTTCAGGTTGAACGAGGTAGGGATGTCAAGTACATCAAGCGGAGGATTGCTAAAAAGGAGAAACAATTTGATGATCCTGAAGACCAGGAGCTTGTGTGTAATGGGGAACGGCTTGAGGATCAGAAGATTATTGATGATATCTGCTGCCAGCATAATGATGCAGTGGTGCATCTGTTTGTTAGAAAGAAGCATGCAAAAGTTCATAGAAGACCCCTTGAGTTGTCCATTGTAGCAACAGACTTGGCTGGTAAGAAAACTAACGATGTTTGCGGAAATTCTAGTGATAGAAAATTTGATGTTGGTGGTGGAAAAGATTCTCTTTCCATTCAAGGAGTTGTGCCAAGAAAGCTTCCTGATAAAGATTTTCTTTTGGAGCCAATTATAATCAACCCTAAAATTGAGTTAGCTTCAGAAATGCAGAATATGGTAAACACTGCACATGATGGACTAGCTAGTGAAAACCATCCAATAGGATCTGCAGAAGGTACAGGGGGAGCTTACTTTATGCTTGATTCAACTGGTCAGAAGTATGTGTCTGTTTTTAAACCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCATTATCATTAAACGGCGAAGGTTTAAAAAAGGGTACAAGAGTCGGCCAGGGAGCATTTAGGGAAGTTGCGGCTTATGTTTTGGATCATCCAATAAGTGGACGCCGCAATTTATTTGGTGATGTGAAGGGTTTTGCTGGCGTTCCTCCAACTTTGATGGTAAAATGCTTGCATAAAGGATTTAACCATCCAGGAGACTTGATTGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAATAACGGGAGCTGCGAAGATATCGGTCCTGGGGCTTTCCCAGTAAATGAAGTACACAAAATTACTGTACTGGACATGAGATTGGCAAATGCAGATAGACATGCTGGGAATATTTTGGTCACCACAGAGGAGCATAATGACCAGCCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACCTTTGAATGGCTTTACTGGCCCCAAGCCCGGAAACCATATTCCGCAGAAACTATTGAGTACATAAAGTCATTGGATGCTGAAGAAGATATTGCACTGTTGAAGTTTCATGGATGGGATCTGCCAATTGAATGTGCCCGCACTCTTAGAATCTCGACCATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACACCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCGTTGAACAAAGAATCTGTGATAGAGGAAATAGTTGAAGAAGCATTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCTCAAATCATGGATCGGCGTCTTCATGATATTTTCAACTCTCCTTTTTAA 1782 0.4125 MSSAGVTTLSPVDPTEPLLSPNASHFPSSLEENSIFIFLSFSGLLTPIRVMKWDTIESVKFKIQRCESIPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDPEDQELVCNGERLEDQKIIDDICCQHNDAVVHLFVRKKHAKVHRRPLELSIVATDLAGKKTNDVCGNSSDRKFDVGGGKDSLSIQGVVPRKLPDKDFLLEPIIINPKIELASEMQNMVNTAHDGLASENHPIGSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLNGEGLKKGTRVGQGAFREVAAYVLDHPISGRRNLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLIAKIGSMQMFVKNNGSCEDIGPGAFPVNEVHKITVLDMRLANADRHAGNILVTTEEHNDQPVLIPIDHGYCLPTSFEDCTFEWLYWPQARKPYSAETIEYIKSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEALDSVLPGTSEATLLDAVSQIMDRRLHDIFNSPF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05267 593 SUPERFAMILY Ubiquitin-like 26 109 IPR029071 -
Vivi6g05267 593 ProSiteProfiles Ubiquitin domain profile. 115 181 IPR000626 GO:0005515
Vivi6g05267 593 Gene3D - 114 199 - -
Vivi6g05267 593 SUPERFAMILY Ubiquitin-like 107 190 IPR029071 -
Vivi6g05267 593 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Vivi6g05267 593 Pfam Ubiquitin family 41 109 IPR000626 GO:0005515
Vivi6g05267 593 SMART ubq_7 35 108 IPR000626 GO:0005515
Vivi6g05267 593 SMART ubq_7 113 187 IPR000626 GO:0005515
Vivi6g05267 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 279 572 IPR000403 -
Vivi6g05267 593 CDD Ubl_ubiquitin_like 115 185 - -
Vivi6g05267 593 ProSiteProfiles Ubiquitin domain profile. 54 108 IPR000626 GO:0005515
Vivi6g05267 593 SUPERFAMILY Protein kinase-like (PK-like) 425 589 IPR011009 -
Vivi6g05267 593 Gene3D - 25 113 - -
Vivi6g05267 593 Pfam Phosphatidylinositol 3- and 4-kinase 288 537 IPR000403 -
Vivi6g05267 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 47 563 IPR044571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05267 Vivi-Chr6 157356514 157359512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05267 32 585 Acyl Lipid Metabolism Gene Families AT5G24240 54.367 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05267 - - gmx:100791631 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05267 6 157356514 157359512 Vivi7g04253 7 110999631 111002352 PCT