Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06290 ATGGAAATTGAAGCAAGGAAAGGGGTTGTAGCAAAAAAGCTATGGAAAATGGTACGTGTATTATTCTTCATGATAACAAAAGGCATAGCCAAGATACATCTTAACTTGATTCTCAAACGTGGAAAACTTGCTGGGAAAGACTTCATCAACACTCTCATCATGAACCGCCAATTATATTATTCCTCCTTCACTTGTCGCTCCTGCGGCAACGGTAACTCCTTCATATCTCCATTGGAATTCGAATTCAGCTGCAGCAACACTCCTCTCCACCACTCTAGCCGCCGCTTCTCGAGGCCGCGTCAGCGATATGGAGATGTTTTCATCATGAATAATAATAATGACATGATGTTGAATAATGAGAAGGTGGAGGCTGTGAAAAATTCTTCTTTGGATACATTTCCTGGTTTTGGAAAGAACCCTGTTGGGAGACAACTAAGAGTTACTGATTCGCCTTTTCTGGTCCAAGATAAAGGGGACAGCAATCAAGTGGACATGGCAGCTGAAGAATTCATTAACAATTTCTATAAACAACTCAATAGACAAAACAGATCAATAGCTACTTATGAGTCATGA 573 0.4049 MEIEARKGVVAKKLWKMVRVLFFMITKGIAKIHLNLILKRGKLAGKDFINTLIMNRQLYYSSFTCRSCGNGNSFISPLEFEFSCSNTPLHHSSRRFSRPRQRYGDVFIMNNNNDMMLNNEKVEAVKNSSLDTFPGFGKNPVGRQLRVTDSPFLVQDKGDSNQVDMAAEEFINNFYKQLNRQNRSIATYES 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06290 190 Pfam Cotton fibre expressed protein 161 181 IPR008480 -
Vivi5g06290 190 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 8 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06290 Vivi-Chr5 169252864 169254629 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06290 - - psat:127107315 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06290 5 169252864 169254629 Vivi7g03817 7 104093826 104094647 ECH
Vivi5g06290 5 169252864 169254629 Vivi2g07949 2 229067645 229068662 ECH
Vivi5g06290 5 169252864 169254629 Vivi5g06290 5 169252864 169254629 ECH
Vivi5g06290 5 169252864 169254629 Vivi4g00091 4 979813 980872 PCT