Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00091 ATGGATATTGAAAAAAACCAACCATTGGTAGCAAAAAAACTATGGAAAACACTACGCATAGTTTTGTTCATGTTAACAAAAGGCATAGCCAAAAGCAAAATGGTAGCAGAATTAAATCTCTTGCTAAAACGCGGCAAAGTCGCGGCGGTTAAAGCCATTGCCAACACTCTCACTCTCCGCCACCATTCCTCCGCCGCTTCGTTCGTCTCGCCGCACGACTACGAATTCAGTTGCAGCAACAGTCCTGCCCTCGTTAAATTCAATAACAAAATTAAAAACCACCGCCATCACCACCACCACCACCATCACCAGAGCGATTATTCAACGGTTCAGAAGGTTTTAGAGATTCTGAATGACGTTGAAGCTTCTTCTTTTTCTTCTCCTTCTCCGATGGTGACATTTCCTGGATTTGGAAAAAGTCCTATGGGGAGAAAAATCAGAATCACGGATTCACCGTTTCCGTTGAAGGAAGAAGAAGGAGATGATCATGGCCATGTTGATGTTGCAGCTGAAGAGTTTATTAAAAGGTTTTATAGAAATCTCAATTTGCAACAGAAATTGGCAGGGATTCAATCACCTTACAACAACTCCCGCGATAGATAG 603 0.4245 MDIEKNQPLVAKKLWKTLRIVLFMLTKGIAKSKMVAELNLLLKRGKVAAVKAIANTLTLRHHSSAASFVSPHDYEFSCSNSPALVKFNNKIKNHRHHHHHHHHQSDYSTVQKVLEILNDVEASSFSSPSPMVTFPGFGKSPMGRKIRITDSPFPLKEEEGDDHGHVDVAAEEFIKRFYRNLNLQQKLAGIQSPYNNSRDR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00091 200 Pfam Cotton fibre expressed protein 164 184 IPR008480 -
Vivi4g00091 200 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00091 Vivi-Chr4 979813 980872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00091 - - gmx:100783043 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00091 4 979813 980872 Vivi7g03817 7 104093826 104094647 ECH
Vivi4g00091 4 979813 980872 Vivi2g07949 2 229067645 229068662 ECH
Vivi4g00091 4 979813 980872 Vivi4g00091 4 979813 980872 ECH
Vivi5g06290 5 169252864 169254629 Vivi4g00091 4 979813 980872 PCT