Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03861 ATGAAACCTATAGAAATGGAAAGCAAGGCACCGATAGTAGCCAAGAAAGTGTGGGACATGGTACGTGTCATGTTCTTCATGATGAGAAAAGGTATATCCAAGGGCAAACTCATGATGGACCTCAACGTCATGCTAAAGCGCCGAAGCAAGCTCGCCGGAAAAGCCATTGCAAACCTAATGTCCCACCACCACCACCACCACCACCACGCCGCCGCCTCCCACGACTCCCACCTTCAATTCTCCGCCCCGAGGGAGTACGAGTTCAGCTGCAGCAACACGCCCAGCGCCTTCTCCTTCCCGGCAATAGGGAAGCGCCACCGCCACTTCTTCGCGTGTGTCCACGCGCCTCCCACTCACGACGACGACTCCGTCACCATGAACGCAGTCAAGACGGTGTTGGAGATGCTGAACAACGACGTCAAGGTCGAGACGACGTCGTCCCCTGCGCTGCCAGGGTTCGGGCGGAGCCCCATGGTGAGGCAGCTGAGGGTGACGGACTCGCCGTTCCCTCTGCGGGATTCCGACCAAGACAACGACCACCAGGTCGATAAGGCGGCGGAAGAGTTCATTAAGAGGTTTTACAAGGAGCTCAGAAAGCAGGATTAA 606 0.5677 MKPIEMESKAPIVAKKVWDMVRVMFFMMRKGISKGKLMMDLNVMLKRRSKLAGKAIANLMSHHHHHHHHAAASHDSHLQFSAPREYEFSCSNTPSAFSFPAIGKRHRHFFACVHAPPTHDDDSVTMNAVKTVLEMLNNDVKVETTSSPALPGFGRSPMVRQLRVTDSPFPLRDSDQDNDHQVDKAAEEFIKRFYKELRKQD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03861 201 Coils Coil 194 201 - -
Viun5g03861 201 Pfam Cotton fibre expressed protein 180 200 IPR008480 -
Viun5g03861 201 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 9 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03861 Viun-Chr5 47065247 47066160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03861 - - gmx:100802625 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02625 10 39812411 39813311 Viun5g03861 5 47065247 47066160 ECH
Viun3g00316 3 1834854 1836200 Viun5g03861 5 47065247 47066160 ECH
Viun4g00131 4 641021 641967 Viun5g03861 5 47065247 47066160 ECH
Viun5g03861 5 47065247 47066160 Viun5g03861 5 47065247 47066160 ECH
Viun5g03861 5 47065247 47066160 Viun10g02625 10 39812411 39813311 PCT