Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02625 ATGGAAAACAATTCAGCAGTGATTGCAAAGAAAGTGTGGAACATAATACGTGTGGCATTCTTCATGCTCAGAAAAGGCATATCAAAGGGCAAGCTAATGATGCACCTTAACGTCATGCTCAAACGCCGCAGCAAACTCGCCGGCAAAGCCATCACCGACCTCATCTTCCACCACCACAACCACCATGTCGGAGTCTCCGGCAACGACCTCCAGTTCTCAGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACCCCCAACAACTTCTTTGCCACCAAGCGCCACCGCCACAACCCTTTCTTCACGTGCGCTCACGCGCCTCCCACCTTCGAGGACGACGCCGTCACCGTTAATGTCGTTCAGGGCGTGCTGGAGATGCTGAACAATGAGGCGGTGATGGAGGCGCCTCCCGCCGACGCCGCATTTCGTAGCCCTGCGGTGAGGCAGCTTAGGGTTACAGACTCTCCGTTCCCACTTCGTGAGTACGAGGATGACAGGGACAACCATGTTGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTACAAAGAGTTGAAGAAGCAAACTTGA 570 0.5404 MENNSAVIAKKVWNIIRVAFFMLRKGISKGKLMMHLNVMLKRRSKLAGKAITDLIFHHHNHHVGVSGNDLQFSAAREYEFSCSNTPNNFFATKRHRHNPFFTCAHAPPTFEDDAVTVNVVQGVLEMLNNEAVMEAPPADAAFRSPAVRQLRVTDSPFPLREYEDDRDNHVDKAAEEFIKRFYKELKKQT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02625 189 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 5 188 - -
Viun10g02625 189 Pfam Cotton fibre expressed protein 167 188 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02625 Viun-Chr10 39812411 39813311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02625 - - gmx:100801941 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02625 10 39812411 39813311 Viun5g03861 5 47065247 47066160 ECH
Viun3g00316 3 1834854 1836200 Viun10g02625 10 39812411 39813311 ECH
Viun4g00131 4 641021 641967 Viun10g02625 10 39812411 39813311 ECH
Viun10g02625 10 39812411 39813311 Viun10g02625 10 39812411 39813311 ECH
Viun5g03861 5 47065247 47066160 Viun10g02625 10 39812411 39813311 PCT