Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00316 ATGGAAATTGAGGGAAGCACGCAGGTGGTGGCGAAGAAGGTATGGAACATCATACGTGTGATGTTCTTCATGTTGAGGAAGGGCATAGCGAAGAGCAAGATAATGGCGGAGTTCAATCTCATGCTGAAGCGTGGGAAGAAAGCTTTGGTGAACAACCTCATGCTGAACCACCACTACATCATCGCCTCTTTCACCGGCCGCTCCAACCACAACCACGCCACCTTCATCTCCCCACGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCGTCCCCTTCCACGCCCACAAAAACCACCGCTTCTCCAAACCCTCCCAACAACACCACGACGTTTCCACCCTCTCCGCCGTTCAGAAGGTTCTCGAAATCCTCAACAACGACGCCACTAACTCCCCCTTCCCCGCCTTCGCCAAAAGCCCCCTTGGCAAACAACTCAGAGTCACCGACTCACCCTTCCCTCTCAAAGACGACGGGGATAGTCAAGTCGACGTGGCCGCCGAAGAATTCATTAAGAAGTTCTACAAAGACCTCAACTTGCAGAAAAAAATGGCATATCTTGAGTCCCCGTATCATACTTCCTGGAGCAGATGA 591 0.5279 MEIEGSTQVVAKKVWNIIRVMFFMLRKGIAKSKIMAEFNLMLKRGKKALVNNLMLNHHYIIASFTGRSNHNHATFISPRDYEFSCSNSPAVPFHAHKNHRFSKPSQQHHDVSTLSAVQKVLEILNNDATNSPFPAFAKSPLGKQLRVTDSPFPLKDDGDSQVDVAAEEFIKKFYKDLNLQKKMAYLESPYHTSWSR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00316 196 Pfam Cotton fibre expressed protein 160 186 IPR008480 -
Viun3g00316 196 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 8 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00316 Viun-Chr3 1834854 1836200 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00316 - - gmx:100305871 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00316 3 1834854 1836200 Viun10g02625 10 39812411 39813311 ECH
Viun3g00316 3 1834854 1836200 Viun5g03861 5 47065247 47066160 ECH
Viun3g00316 3 1834854 1836200 Viun3g00316 3 1834854 1836200 ECH
Viun3g00316 3 1834854 1836200 Viun4g00131 4 641021 641967 PCT