Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02208 ATGTCGCTAGCCACTAGAATGGACACCCAGAGGGAAACGAGTATTCTTTTTGAGACATTCACGTGGAAGATTCAAAATTTCTCAAAACAAAACACCAAGAAACTGCAATCCAAGGCCTTCCGAATCCGAGGTTATAAATGGCGTATTCGTTTGTATCCATTAATGAGAAATGTCGACCATTTTTCGTTATATCTGATGGTCGCGGATTCTTTACCACCCTACGGATGGAACAGAAACACATATTTCAAGTTATCTCTGATTAATCAATTGGATGAGAATAAGTCGGTTGTAAAGGAGACTCAGCAGAAGTTCAATGGCGGATATCGTAGCTGGGGCTCATTTTTCGTGAACCGAAGTGTCTTCTTTGATTCCAAGCAAGGGTATCTTGTGAACGACACATGCATCATAGAAGCTCATGTTTGTGTCTCCGATCTTAGTACAATT 444 0.4077 MSLATRMDTQRETSILFETFTWKIQNFSKQNTKKLQSKAFRIRGYKWRIRLYPLMRNVDHFSLYLMVADSLPPYGWNRNTYFKLSLINQLDENKSVVKETQQKFNGGYRSWGSFFVNRSVFFDSKQGYLVNDTCIIEAHVCVSDLSTI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02208 148 CDD MATH 19 140 IPR002083 GO:0005515
Vimu6g02208 148 ProSiteProfiles MATH/TRAF domain profile. 17 140 IPR002083 GO:0005515
Vimu6g02208 148 Pfam MATH domain 24 141 IPR002083 GO:0005515
Vimu6g02208 148 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 18 143 - -
Vimu6g02208 148 SUPERFAMILY TRAF domain-like 19 143 - -
Vimu6g02208 148 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 148 IPR008974 GO:0005515
Vimu6g02208 148 SMART math_3 19 121 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02208 Vimu-Chr6 19377938 19378776 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02208 K11838 - gmx:102664376 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02208 6 19377938 19378776 Vimu3g00769 3 8554540 8572147 ECH
Vimu6g02208 6 19377938 19378776 Vimu6g02208 6 19377938 19378776 ECH
Vimu6g02208 6 19377938 19378776 Vimu1g00709 1 4563053 4576174 ECH
Vimu6g02208 6 19377938 19378776 Vimu3g00769 3 8554540 8572147 PCT
Vimu3g00253 3 2306086 2318169 Vimu6g02208 6 19377938 19378776 PCT