Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00253 ATGGAAACAAAGAAAATAGTTAATGAGAACCGGACGGTTAGAAGGAACCGAACGGAAGGTTCTATTGCTATGGTTTTCCAAAAGTCCCAAAGTGCTCCACTTGAAAATCCGATCGGTGCGAATGAGCAAGGTGATCGGAGGTGGAGAGGTGGTCAGAATTCTAGAGAGAAGTTTGAAGTTTTAGAGAGAAGGAGGAAAAAAATGGGTTTCTGGAACTTGGGTTCTAAGGAAGATGAAAGGTTGCATGCAGAAAGGTGGCAAGGTTTAAAATCCCACCTTAAATATGGCCTCCAATCTGGAAGGAGATCTCCATTCCCTTACAACCGGACGTTTCCCGAAGTTGGAGAATTAAATCCAACTGCAGCTCCTGTCTCCCACTACCATCCTAAGAAGCTGAAAAGTGATAACAAGCATATTCATGATTACAAGCCTTTGATCTCTTCTCAGCACCAGCAGAACCTCTTACAGGATCTTTGTGAGTATATAAACTTCTGGCCAGCACCAGATGAACATACCGGAATGGTGAATGAATTGAACAGAAGTGTTGATTTCGAGAAGTTCTCATGGAAAATTGAGGATTTCTCTAAACAAAATATCATGAAACTGCGCTCCAAGCCTTTCAAAATCCGTGGGTGTACATGGAGGATCCTTGTGTATCCATTGAGGAATGATGTCAACCATTTTTCAGTGTATTTGATGGTTGATGATTCTTCATTACCTCCGTACGGATGGACCAGACACACTTTTTTCAAGTTGGTTCTGATTAACCAAGTGGACAACAGCAAAACAATTCAAAAAGAGACCAAACAGAAGTTCAATGGAGGATATCGTAGCTGGGGTTCATTTTTCCTGAATCTAAGTGATTTCTACAACCATAATAAAGGATATCTCGTGAAGAACAGCTGCATCATTGAGGCACACATATGTGTCTCGGATTTAGCACCCAATATTCAGGTTCACCCAAATTGTTCTCCATATCATGACTCTTCATCAGGTGGTCAAGCAACAGAAACATCCTCGGATAGGGACAGCATTAGTCCGAGAACCTCAGGATCTAGTGCAGCAGAAGGTGAAACTCAAAAGGGTTGTTCAAGCAGTTTGACACTGAGAGAACTCATAGATTTGAAGAGTTTAGCAGGAGAAGGAGAAGCCTTCATTCCACTTCTGGAAGAGGCTTGCACATGGCATCCAAACCTTATACAGTGCCAGAAGGAGAGAACTCTCGGGTTCAGAAAATGGGCATTCACATCATTAGGCCAAGTTCTTCACTTTCTGAAGACCAAAAGGGTTAAAGATATGAGTGAAGAAGACATAAAATATCTTCGTGATTTGTGGAAGGAACTTGTGAAATCGTCAGGGTTTGATTTGGCATGGCTGAAACCATATGTTGAATCAGCATTGGGTTTGAAAGCTTACACGGAAAAAGCAAAGCAGTTGAAGAAACTTAAGGACACTGTGGTTGGTTTGGAGATCAAGATGAAGAAACTGAGAGGAGAACTTGCTGCTGCTGAAGGATTGTTTGAGGTTGCAAGAAGAGAGTTATCAGAAGTAAGAAGAGGTTTCAATGAGATGGATATGAACTCTACAATTGGATATGCTATGTTTTAG 1608 0.4154 METKKIVNENRTVRRNRTEGSIAMVFQKSQSAPLENPIGANEQGDRRWRGGQNSREKFEVLERRRKKMGFWNLGSKEDERLHAERWQGLKSHLKYGLQSGRRSPFPYNRTFPEVGELNPTAAPVSHYHPKKLKSDNKHIHDYKPLISSQHQQNLLQDLCEYINFWPAPDEHTGMVNELNRSVDFEKFSWKIEDFSKQNIMKLRSKPFKIRGCTWRILVYPLRNDVNHFSVYLMVDDSSLPPYGWTRHTFFKLVLINQVDNSKTIQKETKQKFNGGYRSWGSFFLNLSDFYNHNKGYLVKNSCIIEAHICVSDLAPNIQVHPNCSPYHDSSSGGQATETSSDRDSISPRTSGSSAAEGETQKGCSSSLTLRELIDLKSLAGEGEAFIPLLEEACTWHPNLIQCQKERTLGFRKWAFTSLGQVLHFLKTKRVKDMSEEDIKYLRDLWKELVKSSGFDLAWLKPYVESALGLKAYTEKAKQLKKLKDTVVGLEIKMKKLRGELAAAEGLFEVARRELSEVRRGFNEMDMNSTIGYAMF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00253 535 SUPERFAMILY TRAF domain-like 186 312 - -
Vimu3g00253 535 MobiDBLite consensus disorder prediction 28 52 - -
Vimu3g00253 535 CDD MATH 186 308 IPR002083 GO:0005515
Vimu3g00253 535 ProSiteProfiles MATH/TRAF domain profile. 184 308 IPR002083 GO:0005515
Vimu3g00253 535 MobiDBLite consensus disorder prediction 325 362 - -
Vimu3g00253 535 Coils Coil 479 513 - -
Vimu3g00253 535 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 183 319 IPR008974 GO:0005515
Vimu3g00253 535 SMART math_3 186 289 IPR002083 GO:0005515
Vimu3g00253 535 Pfam MATH domain 192 308 IPR002083 GO:0005515
Vimu3g00253 535 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 184 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00253 Vimu-Chr3 2306086 2318169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00253 - - vum:124839300 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00253 3 2306086 2318169 Vimu6g02208 6 19377938 19378776 PCT