Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00769 ATGATCGCTCGTTCCTCCACTACGCTCGTTCTTCCATATTGCCATGACCCTCGACTCCGGTTACCTTCGCGGCTCCATCGCTGTCGTGCACTCCGTTCTCCGTCACTCCTTGTGCCTGGAAAGCGTGTTCTTCTACTTCAAGACGCCGTGATTAACCTAATCTCGTCTTCAATCCGACTGGCCTTGGAAAACCCTTTGAGGAGTTCTGGAACAACCCTTTACTCTCTCGCATGTTCTCTTCTCCAGCCTTGTTATTTCAACACTGGAGTGATGGTGATGGATTTGGTGCGGTGGAGGGAGGGAAACTACAGGAAGAGGATTGAGAACTGGATGGAACTGCAGAGGAAAAAGAGGATTTATGATTATGAACTGGATGGAAATGCGGCTGACGCCGACGGTTCTGTTGATTTATCACATCCAGATGCAGAACTTAGATTGCTTGAAGTTTTTTATCACAAGATCTATAAGATGCATCGCAGGTTAAATCAATACTTGATATACATACCAGTGAGACTGGGGCTCAAGAATCCTCGGATATTCCATGTCAATGAACGGATTGAGAATATTAATGATCAGTATTGGGCACTCCGAGCAGAAGAGATTCCAGAGGAGGAGAAAAACCTTGGCCCTCAACATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAAATCAAAAACAGCAAGTTCAGAACTTCGGACATCCTTTTTTCTTAGTGATCCATGAGGGTGAGACATTGGCTGAAGTCAAATTGCGAATACAGAAAAAGTTGCAAGTTCCAGATGAGGAGTTTTCCAAGTGGAGATTTGCATTTTTGTCATTTGGTCGTCCGGAGTATCTTCAAGATTCAGATATTGTTTCCACTAGGTTTCAGAGAAGGGATATATATGGCGCATGGGAGCAATATCTCGGACTGGAACACACTGACAATACTCCTAGAAGATCGAATGCAGCGAATCAGAATCGTCACCCATACGAGAAGGCAGTAAAAATCCATGTTTAG 1005 0.4428 MIARSSTTLVLPYCHDPRLRLPSRLHRCRALRSPSLLVPGKRVLLLQDAVINLISSSIRLALENPLRSSGTTLYSLACSLLQPCYFNTGVMVMDLVRWREGNYRKRIENWMELQRKKRIYDYELDGNAADADGSVDLSHPDAELRLLEVFYHKIYKMHRRLNQYLIYIPVRLGLKNPRIFHVNERIENINDQYWALRAEEIPEEEKNLGPQHRLIHVYHFLKDTNQKQQVQNFGHPFFLVIHEGETLAEVKLRIQKKLQVPDEEFSKWRFAFLSFGRPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHTDNTPRRSNAANQNRHPYEKAVKIHV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00769 334 SUPERFAMILY Nucleotide-diphospho-sugar transferases 81 181 IPR029044 -
Vimu3g00769 334 Pfam Ubiquitin-specific protease C-terminal 178 313 IPR029346 -
Vimu3g00769 334 Pfam Glycosyl transferase family 8 81 122 IPR002495 GO:0016757
Vimu3g00769 334 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 59 208 IPR029044 -
Vimu3g00769 334 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 80 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00769 Vimu-Chr3 8554540 8572147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00769 82 121 Glycosyltransferase AT1G70090 80.000 4.97e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00769 K11838 - vvi:100252573 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02208 6 19377938 19378776 Vimu3g00769 3 8554540 8572147 ECH
Vimu3g00252 3 2266911 2268032 Vimu3g00769 3 8554540 8572147 ECH
Vimu3g00769 3 8554540 8572147 Vimu3g00769 3 8554540 8572147 ECH
Vimu6g02208 6 19377938 19378776 Vimu3g00769 3 8554540 8572147 PCT