Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00709 ATGACTGTGATGACTCCTGCTCCTATTGACGTACGTCTCTTACCCTTACTCCGCAACTCCCCCGTGCTCTTTTTCGCGGCTTCATTCACTCGCGCGTTTTCAATTTCGCTTCTCGTTTCTCGTTTTTGTCTTATTTGCTTGCATGATTTTGTTCTTTTTGTTCTTCTGGTTAATGGTGTTAATTTGATTGTCGTTTGGTCGGAGGGTTGGCAGCAGGAGGATGAGGAGATGCTTGTCCCACACACTGATTTGGCGGAGAATAATCACCAACCCATGGAAGTTGTGGCACAACCTGATGCTGCCAACACTGTGGAGAGCCAGCCTGTCGAGGATCCTTCATCGACAAGATTCACGTGGAAAATTGACAACTTTTCTAGAATGAATTCGAAGAAGCTGTATTCAGAAATATTTGCTGTTTACCACATGCCAACAACAGAGAATGACATGCCCTCTGCAAGCATCCCTTTGGCATTGCAGAGTTTATTCTACAAGCTCCAGTATAGTGACACCAGTGTTGCAACAAAGGAGCTCACTAAATCTTTTGGATGGGATACGTATGATTCTTTCATGCAGCATGATGTTCAAGAACTGAACAGAGTCCTTTCTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGACATCATATGAACTATATTGAATGCATCAATGTGGACTATAAATCAACTAGAAAGGAGTCGTTTTATGATCTTCAGCTTGATGTGAAAGGCTGTCCTGATGTATATGCTTCCTTTGACAAATATGTTGAAGTTGAACGTCTTGAAGGGGACAACAAATACCATGCTGAACAATATGGTTTGCAGGATGCTAAGAAGGGTGTCCTATTCATCGATTTCCCTCCTGTTCTTCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACCATGGTCAAGATTAATGACCGTTATGAGTTTCCCATGCAACTCGACCTTGATCGTGAGAATGGAAAATATTTATCACCCGAAGCTGATAGGAATGTCCGCAATCTTTACACACTTCACAGTGTTTTGGTTCATAGTGGTGGTGTACATGGTGGACATTATTACGCGTTTATCAGGCCAACTCTTTCTGAGCAGTGGTATAAATTTGATGATGAGAGGGTAACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGCGAGGAAGAGTTACCACAGACGAATCCTGGGTTTAACAACACTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGGGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAGAAAGACATCGCCGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAGGAGCACAAAAAGAAAGAAAAGGCGGAGGCTCACCTTTACACTATTATAAAGGTGGCACGAGATGAAGACCTTGCAGAGCAGATCGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGACGAGGTTGCTAAAGAGTTTAACATACCAGTTCAATTCCAGCGTTTTTGGCTGTGGGCAAAGCGGCAAAACCATACATATCGTCCAAATCGGCCATTAACACCCATGGAAGAAGCACAATCTGTCGGACAATTGAGAGAGGTATCAAACAAGGTTCACAATGCAGAGTTGAAATTGTTTTTGGAAGTGGAGCTTGGGCTGGATTTACGTCCTATTGCACCACCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGTTATATGATCCTGAGAAAGAGGAGCTACGTTATGTTGGAAGGCTCTTTGTGAAGAATACTGGTAAGCCATTGGAAATCTTGACGAAATTAAACAAAATGGCTGGTTATGACCCTGATGAAGAGATTGGACTATATGAGGAAATTAAGTTTGAGCCAAATGTTATGTGTGAACCTATTGATAAGAAATTAACATTTCGAGCTAGCCAGTTAGAAGATGGAGATATAATATGCTTTCAGAAAGCTCCTGCTATATACAATGAGGAACATGTCCGCTATCCCGATGTGCCATCATACCTAGAATATGTGCACAACCGGCAGGTTGTTCACTTTCGGTCTCTTGATAAACCCAAGGAAGATGACTTCTGCCTCGAGATGTCAAGGCTCTATAAATATGATGATGTAGTGGAGAGAGTGGCTCAACAACTTGGTTTGGATGATCCATCCATAATCAGGCTTACGCCTCACAATTGTTATTCTCAGCAACCAAAACCCCAGCCTGTTAAGTATCGTGGTGTGGAGCATTTGTCTGAAATGCTGGTTCACTATAATCAGACTTCGGACATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTTTGAAAACCCTGAAAGTTGCATTTCACCATGCTACCAAGGATGAAGTGGTTATTCATACCATCAGGCTTCCAAAGCAGAGCACTGTGGGGGATGTCCTTGATGATCTGAAAACAAAGGTGGAATTGTCGTCCCCTGAAGCTGAGCTTAGGTTGCTTGAAGTTTTCTATCACAAGATATATAAGGTTTTCCCTCCCAATGAGAAGATTGAAAACATTAATGATCAATACTGGACTTTACGTGCAGAAGAGATTCCAGAAGAGGAGAAAAATCTGGGTCCACATGATCGCCTAATCCATGTGTATCATTTCACGAAAGATACGGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCCTTTTTCTTGGTCATACGTGAAGGGGAGACTTTGACTGAAATTAAAGTTCGAATACAAAAGAAACTTCAAGTTCCTGATGATGAGTTTGCAAAGTGGAAATTTGCCTTTTTTTCTTTAGGGCGTCCTGAGTACCTTCAGGATTCTGACATTGTATCCAGTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACTGATAATGCTCCAAAAAGATCATATGCTGTCAACCAGGGAAACAGCAAAAGGCTACTCTGTATAGGCCAACTAGTGAGATCAGCAATCCAGATGGTTTCTGCAGATTTTATATTAAAATTGTGGTATGTAATTCTTTCTGTCAAAAGGAGTGACATTGCTCTCAACACTATCTGCTGA 3144 0.4116 MTVMTPAPIDVRLLPLLRNSPVLFFAASFTRAFSISLLVSRFCLICLHDFVLFVLLVNGVNLIVVWSEGWQQEDEEMLVPHTDLAENNHQPMEVVAQPDAANTVESQPVEDPSSTRFTWKIDNFSRMNSKKLYSEIFAVYHMPTTENDMPSASIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPMQLDLDRENGKYLSPEADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLAEQIGKDIYFDLVDHDKDEVAKEFNIPVQFQRFWLWAKRQNHTYRPNRPLTPMEEAQSVGQLREVSNKVHNAELKLFLEVELGLDLRPIAPPDKTKDDILLFFKLYDPEKEELRYVGRLFVKNTGKPLEILTKLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIDKKLTFRASQLEDGDIICFQKAPAIYNEEHVRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYKYDDVVERVAQQLGLDDPSIIRLTPHNCYSQQPKPQPVKYRGVEHLSEMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSSPEAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIREGETLTEIKVRIQKKLQVPDDEFAKWKFAFFSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQGNSKRLLCIGQLVRSAIQMVSADFILKLWYVILSVKRSDIALNTIC 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00709 1047 Pfam Ubiquitin-specific protease C-terminal 782 992 IPR029346 -
Vimu1g00709 1047 Gene3D - 698 795 - -
Vimu1g00709 1047 FunFam Ubiquitin carboxyl-terminal hydrolase 13 127 436 - -
Vimu1g00709 1047 Coils Coil 444 475 - -
Vimu1g00709 1047 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 351 368 IPR018200 GO:0004843|GO:0006511
Vimu1g00709 1047 Gene3D - 580 697 - -
Vimu1g00709 1047 FunFam Ubiquitin carboxyl-terminal hydrolase 13 580 697 - -
Vimu1g00709 1047 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 119 435 IPR028889 -
Vimu1g00709 1047 SUPERFAMILY Cysteine proteinases 141 463 IPR038765 -
Vimu1g00709 1047 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 150 437 - -
Vimu1g00709 1047 Gene3D Cysteine proteinases 126 436 - -
Vimu1g00709 1047 CDD peptidase_C19C 138 435 - -
Vimu1g00709 1047 CDD MATH 116 143 IPR002083 GO:0005515
Vimu1g00709 1047 Pfam Ubiquitin carboxyl-terminal hydrolase 148 432 IPR001394 GO:0004843|GO:0016579
Vimu1g00709 1047 FunFam Ubiquitin carboxyl-terminal hydrolase 13 698 795 - -
Vimu1g00709 1047 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 520 772 IPR024729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00709 Vimu-Chr1 4563053 4576174 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00709 218 390 Miscellaneous Gene Families AT2G24640 27.528 2.87e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00709 K11838 - gmx:100778442 1655.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00709 1 4563053 4576174 Vimu1g00709 1 4563053 4576174 ECH
Vimu6g02208 6 19377938 19378776 Vimu1g00709 1 4563053 4576174 ECH
Vimu3g00252 3 2266911 2268032 Vimu1g00709 1 4563053 4576174 ECH