Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01713 ATGCCCACGCCCGTCGCAGCGGCGCGTCAATGCCTAACCGCCGACGCCGCCCGCGCCCTCGACGAGGCCGTCTCCGTCGCACGCCGACGGGGCCACGCCCAGACCACCTCTCTACACGCTGTCTCCGCCCTCCTCTCACTACCATCCTCCTCACTCCTCCGCGACGCCTGCTCACGCGCCCGAAACTGCGCGTACTCCCCACGCCTCCAGTTCAAGGCCCTCGACCTCTGCCTCTCCGTCTCACTCGACCGCGCGCCATCGTCGCACAGCCACCTCTCTTCCGACCATGATCCTCCCGTCTCCAACTCCCTCATGGCCGCCATCAAACGCTCACAGGCCAACCAGCGGCGCCACCCTGATAACTTCCACTTCTATCACCACCAACAAACTCACCATAACCTAAACTTAAACCAAAACCAAAACCACCAACAACCCTTTTCTGTTTCTTCCGTCAAAGTAGAGCTTCAGCATTTGATTCTGTCAATCCTGGACGACCCCGTCGTAAGCCGGGTCTTCGCCGAAGCTGGTTTCCGGAGCTCCGACATCAAACTCGCCATCCTCCGCCCTCTGCGCCCTCGCGGGCCGCCGATTTTCCTCTGCAATTTATCCGAGCCGCCGCGGCGGTTTCCTTTCTTCTTCGGAGGGGAAGACGGTGGCGGCGAGAATTACCGGCGAATCGGGGAGGTTCTGGTGCGGAGCCGGGGGCGGAATCCGCTGCTTCTTGGAGCGTGCGCCGGCGACGCTCTCCGGAGCTTTGTGGAGGCTGTGGAGAAACGGAGGGAGGGTGTTCTGCCGGTGGAGCTATCGGGGCTGAAGGTGGTTTGCATTGCGGATGAGGTGGCTCGTGGGGATGCGGAGGGTGTGGGGAAGCGCGTGAGGGAGATTGGAAGCTTGGCAGAGCAGTGTGTGGGACCTGGTGTTGTTGTGAGTTTCGGGGACTTGAAGGGTTTTGTGAGCGACGAAGAAGGTGGTGGTGAGGGTTTGAGGGGTGTGGTTGGGGAATTGGCGAAGCTGTTGCAGGTTCATTATGATAAGTTTTGGTTAATGGGTGCTGCTGCTAGTTACGAGAGTTACTTGAAATTCGTGGGGAAGTTTCCTTCCATAGAGAAAGAGTGGGATTTGCAGCTTCTGCCTATCACCTCGGTCAAGCCTTCTGAATCCTATCACCGCCCCAGGTCCAGCTTAATGGATTCATTTGTGCCATTTGGTGGCTTTTTTTCGTCACAGTCTGATTTAAAAGGTCCACCTAATGGATCGTTTTATTGTGTTCCGCACTGTCATCAGTGTGGTGAAAGGTGTGAACATGATGTTCTTGGTGCTTCCAAGGAAAGGCTTTCTGCTTCTTCAGCTGCTGATTCCCATCATTCTAGCTTGCCTCCGTGGTTACAGATTGCAGAATTTGGCACATCAAAGGGATTGAATGTTAAGACCAAAGATAATGACGTTTTGCTTGATAGTAGTGAACCTGGGCCACTGCGTAAGAACTTAGACAAGTTATCCCAGCATCTCCACCTGCAAGATGCAAATACCTTTCCAACTGTTGTGGGGTTTCAGTGTGGTGCTGACAAGAAAAAGGAAGATGCTGACAATTGCAGCAGCAAAATGACAGACAAATCACCCAGTGACTACATCAATCTCAACTCCCATGTACCTGTTGGCATGCAAATGATGCCTGCGTCACACTCAAGTAGTCCTTTTCCTGAAGTTTTCAAGGCAAAGCAGGAGAAATATACTTCAAAACTTGCTGAGATATTTCAGAAAGTGGAAGATCACGAGTCAGGTGACCTAAGATCGTGCAACATGTCCAATTCAAGCGTGTGTGATGGAAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGACCTCGGGTTAGGAATATGCTCTTCTCCTACCAGCAATAAGCTAAAGAAACCTACTACTGTTCAATACACAATGGAGCCTCCAAAGGAAATCCCAAGTCTGTTTTCTTCAAACTTAAATTTGGCTGATGGGAATATCTTAAAGCATCCATCGCAGTCTTCCTCCTGCTTAAGTTTTGACTATTGTGGACAAGTCGATGCAAAAAATCCCAAATTTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGACGAGGCTTTACAGGCTATCATCAAAACAATAGTTTCCAGCTCAACAAAAAGGGTCAAACACCGTGGAGTAAATCAGCCTGGAGACATCTGGATGAATTTTGTTGGACCTGACAGACTTGGTAAAAAGAAAATTGCCGTCTCTCTAGCCGAGTTTTTGTATGGCAGCCGGGAAAGCTTTATTTTTGTGGATCTAAGTTCTGAAGAAATGAAAGGATGCAATGCGAAATTCAGAGGGAAAACTACCCTTGATTTTATTGTAGGGGAGTGTTGCAAAAAACCCTTGTCCGTGGTTTTGCTTGAAAATGTAGACAAGGCAGATATTCTAGCTCAAAAAAGTTTGTCTCAAGCCATCAAGGCAGGAAAAATAATAGACTCTCGTGGAAGAGAAGTTAGTGTAAACAATACTGTGTTTGTTTTATCTTTCTCAGATTACCAAAATAGTTGCATTTCAACTGGTGAACCTTCCAACTATTCTGAGGAAAAAATACTGAAGGCAAAGGGGGGAGGTATCAAGCTACGCGTCAAACATGTGATTGGAGACCACAGAAGCCAAAGCATCGGTGTCACTAACAATTCAATGGATGCCATTCCTAATCTAAATTTCCTAAACAAACGTAAGTTGATTGGTGACAAGGAATTTCATGATCAAGATATACTCTCTGATACAGCTAAAAGGGCACATACAGCATCAGGCTGGCAGTTAGATTTGAATCTCCCAGCCGAAGAAAATGAACAGAAACTAACCAATGAAGGAAACCCCGAACATGTCACAACCGAAAACAAAAGCCTTTGGTTGCAAAATTTGTGTGACCTGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGTGGATAGATTGTTGAATGTGATTAGAGGTAACTTCAAAAAGATTCTTGGATCTGAATGTGTATTACAGATTCAGACAGAAGTGATGAACCAATTGCTTAAAGCTCAATATGTCTCGGACAGGGATTCGGAGGTGGAGAACTGGGTGGAGGAAGTTCTATGTGAAGGATTTACAGAAATACAGAAAAGGTACAACCTCACTACTGGTTCTATTGTAAAACTTGCTACGTATCCAGAACAAGCTCCTGGTGTACACCTTCCCCCGAGGATAATTTTAGATTGA 3261 0.4765 MPTPVAAARQCLTADAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSSLLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHSHLSSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHQQTHHNLNLNQNQNHQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGGEDGGGENYRRIGEVLVRSRGRNPLLLGACAGDALRSFVEAVEKRREGVLPVELSGLKVVCIADEVARGDAEGVGKRVREIGSLAEQCVGPGVVVSFGDLKGFVSDEEGGGEGLRGVVGELAKLLQVHYDKFWLMGAAASYESYLKFVGKFPSIEKEWDLQLLPITSVKPSESYHRPRSSLMDSFVPFGGFFSSQSDLKGPPNGSFYCVPHCHQCGERCEHDVLGASKERLSASSAADSHHSSLPPWLQIAEFGTSKGLNVKTKDNDVLLDSSEPGPLRKNLDKLSQHLHLQDANTFPTVVGFQCGADKKKEDADNCSSKMTDKSPSDYINLNSHVPVGMQMMPASHSSSPFPEVFKAKQEKYTSKLAEIFQKVEDHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPTTVQYTMEPPKEIPSLFSSNLNLADGNILKHPSQSSSCLSFDYCGQVDAKNPKFLFEALSKEVSWQDEALQAIIKTIVSSSTKRVKHRGVNQPGDIWMNFVGPDRLGKKKIAVSLAEFLYGSRESFIFVDLSSEEMKGCNAKFRGKTTLDFIVGECCKKPLSVVLLENVDKADILAQKSLSQAIKAGKIIDSRGREVSVNNTVFVLSFSDYQNSCISTGEPSNYSEEKILKAKGGGIKLRVKHVIGDHRSQSIGVTNNSMDAIPNLNFLNKRKLIGDKEFHDQDILSDTAKRAHTASGWQLDLNLPAEENEQKLTNEGNPEHVTTENKSLWLQNLCDLVDETVVFKPYDFDALVDRLLNVIRGNFKKILGSECVLQIQTEVMNQLLKAQYVSDRDSEVENWVEEVLCEGFTEIQKRYNLTTGSIVKLATYPEQAPGVHLPPRIILD 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01713 1086 MobiDBLite consensus disorder prediction 524 543 - -
Vimu6g01713 1086 Gene3D - 676 885 IPR027417 -
Vimu6g01713 1086 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1058 - -
Vimu6g01713 1086 ProSiteProfiles Clp repeat (R) domain profile. 8 195 IPR004176 -
Vimu6g01713 1086 Pfam Clp amino terminal domain, pathogenicity island component 153 187 IPR004176 -
Vimu6g01713 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 1027 IPR027417 -
Vimu6g01713 1086 Gene3D - 10 189 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01713 Vimu-Chr6 15659042 15664531 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01713 - - gmx:100800606 1768.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01713 6 15659042 15664531 Vimu1g00904 1 6284507 6290406 ECH
Vimu6g01713 6 15659042 15664531 Vimu6g01713 6 15659042 15664531 ECH
Vimu3g00166 3 1399338 1404036 Vimu6g01713 6 15659042 15664531 ECH
Vimu2g02184 2 16724279 16730566 Vimu6g01713 6 15659042 15664531 ECH
Vimu6g01713 6 15659042 15664531 Vimu2g02184 2 16724279 16730566 ECH
Vimu6g01713 6 15659042 15664531 Vimu1g00904 1 6284507 6290406 PCT