Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02184 ATGCCGACGCCGGTAAGCACCGCGAGGCAGTGTCTCACGGACGAGGCGGCGCGTGCGCTCGACGACGCCGTCACGGTTGCCCGCCGTCGAAGCCACGCTCAGACCACCTCCCTCCATGCCGTTTCCGCGCTTCTCTCACTCCCGTCCGCTGCGCTTCGCGACGCCTGCGCTCGCTGCCGGAGCTGCTCCTACTCCCCCCGCCTCCAGTTCCGCGCCCTCGAGCTATCTGTCGGCGTCTCCCTCGACCGCCTCCCCACAACCAAAACTGCTGGCTCCACCGGGGCGGATGGCGGGGCCGGCGACGAGGGTCCCCCTGTTTCGAACTCCCTCATGGCCGCCATAAAGCGCTCACAGGCGAACCAGCGTCGCCACCCGGATAGCTTCCACCTTATGCAGATGATGCAGCAGCAGCAGCATCAGACGTCGTTGCTGAAAGTCGAACTCAAACACTTCATTCTGTCTATTCTCGACGACCCTATCGTGAGTCGCGTCTTCGGCGAAGCTGGTTTCAGAAGCTACGACATCAAGCTGGCGCTTCTTCAACCACCTCCACCTTCAAGAATCTTCTCGCGGTTGACCCCTCCGGTTTTCCTCTGCAACCTCGAACCGGTTCAGAAGAGCGGTTCGCGGCTGGACGAGAATTGCCGCAGAATCGTGGAGGTGGTGACGAGGAAGAGCAAAAGGAACCCTCTTTTGATGGGGGTGTATGCGAAAAGCGCTCTGAAGAGCTTCATCGAATGCGTGGAAGCTCGTAAAGGTGGGGTATTGCCCTGTGAGCTGAATGGGTTGAGTGTGGTTTCGGTGGAGAAGGAGATTGGGGAGTTCTTGAGGGAAGGTGGGAAGGGAGGGAAGATTTTCGAGGAAGTGGGTCGATTGGTGGAGCAGTGTTCTGGTGCTGGAGTTGTGGTGTGTTTTGGGGAGATTGAGCTTTTTGTCGGGGGGAATGAGGAGGGTGTTGGGTTTGTGGTTTCGCAGTTGACGAGGTTGTTGGGTGTTCATCTTGGGAAGGTGTGGTTGGTGGGCGTGGCGGGAACCTCGGAGGCCTATTCTAAGTTCCTGAGGTTGTTCCCTACAGTGGACAAAGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCACCCCTTTCATGGAAGGACTATACCCCAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGCGGGTTCTTTTCTACAACTTCTGAGTTGAAAAATCCCGTTAGCTGTACGAATGCATCATCTTTAACACGGTGTGACACATGCAATGAAAAGTGTGAACAAGAAGTTGCTGATATTTTGAATGTAGGTCCTGCAGCTTCAGCATCTGGTTACTCAACTAGCTTGCCTTGGTTACAAAAGGTTAATGTGGAGACAGATTTGGCAAAGATTCCTTCATGTTCATATTCTTCTCTTTCTGTTAAAATTCTTGGATACCCCGTTGTCTGTGGTCTTGTTTTGCATCAGTTTGTGACTACTAATGAAGAAAACACCAGTCTGAATGGGAAGATCTTCGGATTGCAGAGGAAATGGGGTGATATTTGCCAACGTCTTCATCAAAACCGATCATTACCTGAATTTGATATTTCTAAAACAAGGTTCCAAGTTCCTTCCCTTGAGGGTTTTCAATTTGGTCCAGGAAGTAGTAGCAAAGGTCCACCCCATAGTGAAATCCAATATTCTCAAACTGCATTTCCATTTAAACAGATGTTACCAGTTTCAGTACCTTTTGACACTGTTACCATCACCGATGAAGCAGATCACATGGCAAAAGTTTCTAAGAGTGATATGCACAGTACTTGGGTTTCTCCTTCCCCTAAGGCCAATTTGAGCCTACTTGATCACACACCATCTTCATCCTTCACTCCTGTGACCACTGATTTGGGATTGGGAACGATATATAAATCAGCCACTCATGAGCCAGACACCCCAAAACTAAGTGATCACAAGAAGCATCTTCACAACCTGCCAGATTCCCTTTCAAGTGATTTTAATCCTATGAATGAGTGTACTGCACACCAAATTGCTAGATCTTCTTCATGCTCAGGGCCAAATCTAGAAGGGCATTTTGAAACAGTAGATTTCAAGTCACTGTACCATCTTCTCACTGAAAAGGTTGGGTGGCAGGATGAGGCCATATATGCTATCAATCAGACTGTGTCACGGTGTAGATCTGGTGCTGGAAAGCGTAGTAGTAGCTCACATGTTAGAGCAGACACATGGCTTGCATTCCTTGGACCTGATAGAGTTGGGAAAAGAAAACTTGCTTCAGCACTTGCTGAGATTTTATTTGGAAACAAGCAAAGCCTAATTGCTGTGGATTTGAGCTCTCAAGACAAGTGTTACTCATCAAACTCAGTTTTTGAATTCCAAGATTCATATTGTCATGATGTGCTTATGAGGAAGACAGTTGTGGACTATATTGCTTGGGAATTGAGTAAAAGGCCACACTCAGTTGTTTTTCTTGATAATGTAGATCAAGCAGATTTTCTTGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGTAAATTCTCGTACTCGCATGGTAGGGAAATCAGCATCAACAATGCAATATTTATTGTAGCCTCTAGTGTGTTTAAAAAAGGCATTGGCTCTTGGAATATGGAGGAGGATCCTAAGATGTTCCCAGAGGAAAGAATCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACATTCTTCCCAGGATGCCAAAAGGAGTGTTTGCACAAATGTGAAGGTTGCTCAAAGAAAAGGGACCTCCAAAACAACAATCCTGAATAAAAGAAAGCTAGCAGAAAGTGATCATTCTGAAGAGAAAGCATCATGCAAGACAATGAAGCAGGTGATGGAGTCATCAAGGTCCTATCTGGATCTTAACATACCTCTGGAGGAGGTTGAAGAGGACAACAATTGCAGTGATTATGAAAGTGAGTCCTCCATAGTTGAAAAAAACCCTGGAGCCTGGTTAAATGACTTGTGTGATCAAGTTGACGAGAAAGTTGTGTTTAAGCCATTCAATTTTGATTCTCTTGCTGAGGAAGTAATAAAAAGAATTGACATACAATTTCAAAAGACGTTTGGGTCAGAATTTATGCTGGAAATTGAGTATGAGGTGATGACACAGATTCTTGGAGCTGCATGGTTATCTGATAAGAAAAAAGCATTGGAAGATTGGGTTGAACATGTTCTTGGTAGAAGCTTTGGTGAAGCTCTACACAAGTACCATTTTGCAGCAGAATATGTGGTGAAACTGGTTAACTGTGAAAGAATTTTTTTGGAAGATCAATCTCCTGGAGTTGTGCACTTGTGGTGGCCTCTACTGCTTTGCAAAGCTATTGACAATGGGTTTCACCCTATCACACTCACAAGGTTAGTCTGTACCACGCCTTGA 3399 0.4663 MPTPVSTARQCLTDEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSAALRDACARCRSCSYSPRLQFRALELSVGVSLDRLPTTKTAGSTGADGGAGDEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQHQTSLLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPPSRIFSRLTPPVFLCNLEPVQKSGSRLDENCRRIVEVVTRKSKRNPLLMGVYAKSALKSFIECVEARKGGVLPCELNGLSVVSVEKEIGEFLREGGKGGKIFEEVGRLVEQCSGAGVVVCFGEIELFVGGNEEGVGFVVSQLTRLLGVHLGKVWLVGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPFMEGLYPKSSLMGSFVPFGGFFSTTSELKNPVSCTNASSLTRCDTCNEKCEQEVADILNVGPAASASGYSTSLPWLQKVNVETDLAKIPSCSYSSLSVKILGYPVVCGLVLHQFVTTNEENTSLNGKIFGLQRKWGDICQRLHQNRSLPEFDISKTRFQVPSLEGFQFGPGSSSKGPPHSEIQYSQTAFPFKQMLPVSVPFDTVTITDEADHMAKVSKSDMHSTWVSPSPKANLSLLDHTPSSSFTPVTTDLGLGTIYKSATHEPDTPKLSDHKKHLHNLPDSLSSDFNPMNECTAHQIARSSSCSGPNLEGHFETVDFKSLYHLLTEKVGWQDEAIYAINQTVSRCRSGAGKRSSSSHVRADTWLAFLGPDRVGKRKLASALAEILFGNKQSLIAVDLSSQDKCYSSNSVFEFQDSYCHDVLMRKTVVDYIAWELSKRPHSVVFLDNVDQADFLVQNSLFQAIRTGKFSYSHGREISINNAIFIVASSVFKKGIGSWNMEEDPKMFPEERILEAKRCQMQLSLGHSSQDAKRSVCTNVKVAQRKGTSKTTILNKRKLAESDHSEEKASCKTMKQVMESSRSYLDLNIPLEEVEEDNNCSDYESESSIVEKNPGAWLNDLCDQVDEKVVFKPFNFDSLAEEVIKRIDIQFQKTFGSEFMLEIEYEVMTQILGAAWLSDKKKALEDWVEHVLGRSFGEALHKYHFAAEYVVKLVNCERIFLEDQSPGVVHLWWPLLLCKAIDNGFHPITLTRLVCTTP 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02184 1132 ProSiteProfiles Clp repeat (R) domain profile. 8 185 IPR004176 -
Vimu2g02184 1132 MobiDBLite consensus disorder prediction 87 108 - -
Vimu2g02184 1132 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1073 - -
Vimu2g02184 1132 Gene3D - 10 181 IPR036628 -
Vimu2g02184 1132 CDD RecA-like_ClpB_Hsp104-like 693 867 - -
Vimu2g02184 1132 Gene3D - 672 924 IPR027417 -
Vimu2g02184 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 865 IPR027417 -
Vimu2g02184 1132 Pfam AAA domain (Cdc48 subfamily) 742 867 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02184 Vimu-Chr2 16724279 16730566 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02184 - - gmx:100776148 1711.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02184 2 16724279 16730566 Vimu2g02184 2 16724279 16730566 ECH
Vimu2g02184 2 16724279 16730566 Vimu6g01713 6 15659042 15664531 ECH
Vimu2g02184 2 16724279 16730566 Vimu1g00904 1 6284507 6290406 ECH
Vimu6g01713 6 15659042 15664531 Vimu2g02184 2 16724279 16730566 ECH
Vimu3g00166 3 1399338 1404036 Vimu2g02184 2 16724279 16730566 ECH