Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00904 ATGCCTACGCCGGTGGCTATTGCGATACAATGCCTGACGGTGGAGGCCGCAAAGGCGCTCCACGACGCCGTATCGGTGGCTCGGCGGCGCGGTCACGCCCAGACTACTTCACTGCACGCCGTCTCTGCTATGCTTTCCCAGCCATCCTCTACCCTGCGCGACGCATGCACACGCGCCCGAAGCGCCGTCTACTGGACGCGCCTTCAATACAGAGCCCTTGAACTCTCCCTCAGCGTGTCACTCGACCGTGTGCCGTCAGATTCTTGCGTCGGCGATGATCCTCCTGTGTCGAACTCGCTCATGGCCGCCATCAAGCGGTCGCAAGCTGAGCAGCGCCGCAAGCCGGAGAACTTCCACCTCCAGCAGCCTTGTTGCGTTAAGGTGGATCTTCGGCAGCTGATCCTGTCCATCCTCGACGACCCCGTCGTGAGTCGCGTCTTCGCCGAAGCGGGTTTTCGGAGCTCTGAGATCAAACTCGCTATCCATCGTCCCCTTACTAGCCTCATGCAACAACAACTTCCGCTTCGCCGGAGCTTTCCCTTCCCTTTCTCCGGCGAGGACAACGACGATCATAGGAGGATCGCGGAGGTGCTATCCCGGAAGAGAGGCAGAAATCCCCTGCTTCTGGGTGCATGTGCACGTGATGCGCTGTGGAGCTTCGCGGAAGCAGTGGAGAGGCAAAACGGCGGCGTATTACGGGAGTTGTGCAGTTTGCGCGTGAAGCGCATTGGAAGAGAGGTTATGGAGTTTGTTAGTGGGAGCTGCGGGGAAGAGGGTGTGCGTTGGAGGTTTGAAGAGATTGGTGATATGGTGGAGCAGCGCGTGGGAAAGGGTATAGTGGTGGATGTGGGAGATTTGGAGGATTTGGTGAATGAGAAAAATGGTTGGGGTGAGAGTGAGGCAGTTAGGTATGTGGTTGTAGGGCTAGGAAAGTTGTTGGAAGTTAGTTATGGAAGATTATGGCTCATTGCTGCTGCCACAAATTATGAAAGCTTTATCAAATTCGTTGGAAGGTTTCCTTCTATAGAGAAGGATTGGGACTTGCAGCTTTTGCCAATTTTCTCTCTTCGCTCTTCATTTTCTGCTCAATCATATCACACTCGCAGGTGTGAACCGAGTACTCTCGCTGCTTCAACCGTTGATCTTTGCTTGCCTAACTTACCTCCACGATTGCACATTTCAGAATTAGGATCAGCAAAAGGATTAAATCTTAAGATAGAAGATGATGGTGTCGTGTGGAATAGTAGTGAATCTGCTACGCATAAGAACTTGGACAAGAGGTGGCAGAATCTGCATAAAATATTCCCTGATGCAAATAACAGTCCAACAGTTATGGCGTTCCAATATTGTGACAATAAAGAAAAAGATGCTAACAACACCAGCAACAGACTTACACTCACATCATCAAGGCATGAGAAGTATACTCCAAAACTTTCACAGAAGTTCCAGAAAGTGGAACGTTTGGATTCAAGTAATCTAGGATCATGCAACATGTACACTTCCATTGTTTGTGATTTGGGATTAGGAATGTGCTCCTCTCCTTCCAGTAATAAATCTAGCAAACCTTCCAGTCAATTTACAATTGAACCTCCAAAGGAAATGTCAAGTTTATGTTCTTCAGAAGTTAATGTTGCTGGTGGAAATATCTTGAAGCCTCCATCCCAGTCACCAACCTTAAGTTTTGACTTTTGTAGACAGGTTGATCCAAGGAATCCCAAAATTCTTTACGATGTCCTTACTAAGGAGGTTAACTGGCAAGATGAAGCCATTAGTGTCATCAGCAAAACAATAGCTGGCAGCCATACAAAAAAGGTTGGTGCAAATCATAGGGGTGACGTGTGGATGAATTTTGTTGGACCAGATAGGAATGGTAAAAAGAAAATTGTTGTTACTCTAGCTGAGTTCTTGTATGGAAGCCGGGATAGATATATTTTTGTGGATCTAGGTTCTAAAGAAATGAAAGGATGCAATGTGAAATTCAGAGGAAAGACTACTCTTGATTTAATTGTAGGTGAATATTGCAAGAACCCGTTCTCTGTGGTCTTTCTCGAAAATGCAGACGAGGCTGATGTGTTAGTTCAAAATGGTTTGTCTCAAGCCATGAAAACAGGAAAGCTTACTGACTCACGTGGAAGAGAAGTGGGTGTAAACAATGCAATATTTGTGACTTCTTTCACTGGTCACCAAGCAATGGAACCGTCCAACTGTTCCGAGAGAATAGCAAAGGTAAAAGGGAGGGCTATAAAAATAACAGCTGAACATGTGAGCGGAGACATCAAAAGCCAAAGTGTTAGTGTATGTGATGGTTCAATAGATAACATTCCCTATCCAGTTTTAGCTAATAAGCGAAATTTCATTAGCCACAATGAGTTTCAAGATCAGCACTTAATCTCAGACAAGGCTAAAAGAGTACACACAACACCAAATTTGCATTTAGATTTGAATCTTCCAGCTGAAGAGAATGAACCTCAAGTTCAACAAATGAATAATGTGAACTTGGAACATGCATCAACTGAGATCCATAACCTTTGGTTGCAAGATTTGTATAAACTGATAGAATCTGAAGTCATGGACCAATTGCTTGCAGCTGCATATGCCTCAGATGGGCAGAACAAGTTCTCTGTGGGGGATTTACAGAAGCACATAGAA 2649 0.4598 MPTPVAIAIQCLTVEAAKALHDAVSVARRRGHAQTTSLHAVSAMLSQPSSTLRDACTRARSAVYWTRLQYRALELSLSVSLDRVPSDSCVGDDPPVSNSLMAAIKRSQAEQRRKPENFHLQQPCCVKVDLRQLILSILDDPVVSRVFAEAGFRSSEIKLAIHRPLTSLMQQQLPLRRSFPFPFSGEDNDDHRRIAEVLSRKRGRNPLLLGACARDALWSFAEAVERQNGGVLRELCSLRVKRIGREVMEFVSGSCGEEGVRWRFEEIGDMVEQRVGKGIVVDVGDLEDLVNEKNGWGESEAVRYVVVGLGKLLEVSYGRLWLIAAATNYESFIKFVGRFPSIEKDWDLQLLPIFSLRSSFSAQSYHTRRCEPSTLAASTVDLCLPNLPPRLHISELGSAKGLNLKIEDDGVVWNSSESATHKNLDKRWQNLHKIFPDANNSPTVMAFQYCDNKEKDANNTSNRLTLTSSRHEKYTPKLSQKFQKVERLDSSNLGSCNMYTSIVCDLGLGMCSSPSSNKSSKPSSQFTIEPPKEMSSLCSSEVNVAGGNILKPPSQSPTLSFDFCRQVDPRNPKILYDVLTKEVNWQDEAISVISKTIAGSHTKKVGANHRGDVWMNFVGPDRNGKKKIVVTLAEFLYGSRDRYIFVDLGSKEMKGCNVKFRGKTTLDLIVGEYCKNPFSVVFLENADEADVLVQNGLSQAMKTGKLTDSRGREVGVNNAIFVTSFTGHQAMEPSNCSERIAKVKGRAIKITAEHVSGDIKSQSVSVCDGSIDNIPYPVLANKRNFISHNEFQDQHLISDKAKRVHTTPNLHLDLNLPAEENEPQVQQMNNVNLEHASTEIHNLWLQDLYKLIESEVMDQLLAAAYASDGQNKFSVGDLQKHIE 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00904 883 ProSiteProfiles Clp repeat (R) domain profile. 9 167 IPR004176 -
Vimu1g00904 883 SUPERFAMILY Double Clp-N motif 12 160 IPR036628 -
Vimu1g00904 883 Gene3D - 9 164 IPR036628 -
Vimu1g00904 883 Gene3D - 548 763 IPR027417 -
Vimu1g00904 883 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 831 - -
Vimu1g00904 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 727 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00904 Vimu-Chr1 6284507 6290406 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00904 - - vra:106764383 1644.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01713 6 15659042 15664531 Vimu1g00904 1 6284507 6290406 ECH
Vimu3g00166 3 1399338 1404036 Vimu1g00904 1 6284507 6290406 ECH
Vimu2g02184 2 16724279 16730566 Vimu1g00904 1 6284507 6290406 ECH
Vimu1g00904 1 6284507 6290406 Vimu1g00904 1 6284507 6290406 ECH
Vimu6g01713 6 15659042 15664531 Vimu1g00904 1 6284507 6290406 PCT