Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00166 ATGAGAACAGGAAGCTGTGCTGTGCAACAGGGTCTAACCCCGGAAGCTGCAGGCATAGTTAAGCAAGCGGTGACACTGGCGAAGCGTCGTGGGCACGCTCAAGTGACGCCACTCCACGTTGCCAACACGATGCTCTCGATCACCAACGGGATTCTAAGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTTGCGCTCAATCGGTTACCGGCTTCAACCTCTTCCAGTCCCATGTTGCAAGGCTCTCACCACCACCACTCTCACGCGTGCCCCTCTATCTCGAACGCTCTGGTTGCCGCGTTCAAACGCGCTCAGGCACACCAACGACGTGGATCCATTGAGAATCAACAACAGCCTCTTCTGGCAGTGAAAATAGAACTCGAGCAACTAATTATTTCGATCTTGGATGACCCTAGCGTTAGCCGAGTCATGAGGGAGGCTGGGTTCTCTAGCACTCAGGTGAAAAGCAACGTTGAACAAGCGGTTTCTTTGGAAATATGCTCTCAGAACAATGGTAGTGGCAATAACAGTAATAGTAATAGTAATACTAAGGCAAAGGAAAACAGCAGCAGTGGAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTTGCTAGTGTTATTGACAATTTAGGGAATCAGAGAAAAAGAAGTGTTGTGATAGTAGGAGAGTGTGTTACAAGTCTGGAGAGTGTAGTTAGAGGAGTGATGGAAAAGGTTGATAAAGGGGATGCTGGTGAGTGTCTTAGAGGTGTCAAGTTTATCCCTCTTTCTCTTTCTTCTTTTGGGAATGTTTCGAGAGTGGAAGTTGAGCAAAAGGTTGAAGAGCTCAGGAGTCTTGTGAAGGGAAGTGAACATGGCAAAGGGTATGTTTTGTATTTGGGAGATCTCAAATGGGTGTTTGATTATAGAGCTTGTGGATCACAAGGGAGAGCGTGTTATTGTCCAGTGGATCACATGGTGATGGAGATTGGGAAGCTTGTGAGTGGGTTTGAAGAGAATAATGGTGGAAGGTTTCGCTTGATGGGTGTAGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCAACCATCGTTGGAAACTCTTTGGGATCTTCATCCCATTACTATCCCTGCCGGAAGCTTGCGTTTGAGTCTCATCACTGACAGTGGTGTAGAAAATGAGGCCATAAACAAGAAAGCTGACAACAGAAGTAGCTGGCTCTTACTCGAAGGAGTGGAGGATGATCACAAACAACAACCTTGCTTCGCGGAACCTTCCACCAAGAATGAGACCGAAATTCGAAGCTTGCAAAGCAGTACTTGTAATAGTGACTCCTCAACTTCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTACAATGATCAGAATTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGCAGTTCAACCCAAAAGCAACCTTATCCTTCAGACAAAACACTCACACTATCCTCAGTATCACCCTCTTCCTCAACCTCAGGTTTCTCATACGAACAACAACATTCTAATTTGCACCAAACCCATCATGAGTGGCAAGTGGGTTCACCCAAGGACTCATTGAACAACCACCATTTCTGGATCTCAAACAATGGATGCAACAACCCCAATGAACCAGCTTTGCGAGTGTACATTCCAGAGAACAAGGACACCACAAAGCAACCGTTCTCATCTCCCAACCCTAACTCCGCTTCTTCCAGTGACGTCATGGAAGTGGAGCACGTGAGCAGGTTCAAAGAGTTAAACTCGGAGAACTTGAAAACACTGTGCAATGCTTTGGAGAAAAAGGTGTCGTGGCAGAAGGATATAATACCGGAAATTGCGAGCACCGTTTTACAGTGTCGTTCTGGCATGGTGAGAAGAAAAGGAAAAGTTAGAAACAGTAAAGAAGTGAAAGAAGAAACGTGGTTGGTCTTCCAAGGTGTTGATGTGGAAGGTAAAGAGAAAATAACAAGAGAATTGGCTCGGCTTGTTTTTGGGTCCCACGACCACGTCGTTTCCATAGCATTGAGCAGTTTCGCGTCGACAAGAGCAGATTCAACAGAGGATTATAGCAGGAAGAAGAGATCAAGAGAAGAAACAAGTTGCAGTTACATAGAGAGGTTCGCAGAAGCAATGATGAACAACCCTCATAGAGTGTTTCTTGTTGAAGATATAGAGCAAGCTGATTATTGTTCTCAACTTGGTTTCAAAAGGGCTATGGAGAGAGGGAGAGTTACGGATTCAAACGGTGAAGATATTGCACTTTGTGACGCAATCATCATTCTGAGCTGTGAAAGTTTCAGTTCAAGATCAAGAACTTGTTCTCCTTCGATCAAACAAAAATCGATGTCTGAGGAAGAAAAGAATGGCGACATTGGCACTTTGGAGGAGACAAGCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGACGAGAACGAGGTTGAGGATCGATCGGTGGATGAAATTGGGCTTCTTGAATCCGTAGACAGGAAGATTGTATTCAACTTTCAGGAATTGTGA 2583 0.4537 MRTGSCAVQQGLTPEAAGIVKQAVTLAKRRGHAQVTPLHVANTMLSITNGILRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGSGNNSNSNSNTKAKENSSSGEKGLVLDPIRGEDVASVIDNLGNQRKRSVVIVGECVTSLESVVRGVMEKVDKGDAGECLRGVKFIPLSLSSFGNVSRVEVEQKVEELRSLVKGSEHGKGYVLYLGDLKWVFDYRACGSQGRACYCPVDHMVMEIGKLVSGFEENNGGRFRLMGVATFQAYMRCKNGQPSLETLWDLHPITIPAGSLRLSLITDSGVENEAINKKADNRSSWLLLEGVEDDHKQQPCFAEPSTKNETEIRSLQSSTCNSDSSTSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSTQKQPYPSDKTLTLSSVSPSSSTSGFSYEQQHSNLHQTHHEWQVGSPKDSLNNHHFWISNNGCNNPNEPALRVYIPENKDTTKQPFSSPNPNSASSSDVMEVEHVSRFKELNSENLKTLCNALEKKVSWQKDIIPEIASTVLQCRSGMVRRKGKVRNSKEVKEETWLVFQGVDVEGKEKITRELARLVFGSHDHVVSIALSSFASTRADSTEDYSRKKRSREETSCSYIERFAEAMMNNPHRVFLVEDIEQADYCSQLGFKRAMERGRVTDSNGEDIALCDAIIILSCESFSSRSRTCSPSIKQKSMSEEEKNGDIGTLEETSPCVSLDLNISIDDENEVEDRSVDEIGLLESVDRKIVFNFQEL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00166 860 Gene3D - 208 385 IPR027417 -
Vimu3g00166 860 MobiDBLite consensus disorder prediction 179 201 - -
Vimu3g00166 860 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 856 - -
Vimu3g00166 860 MobiDBLite consensus disorder prediction 179 208 - -
Vimu3g00166 860 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Vimu3g00166 860 Gene3D - 589 838 IPR027417 -
Vimu3g00166 860 Gene3D - 9 174 IPR036628 -
Vimu3g00166 860 MobiDBLite consensus disorder prediction 497 522 - -
Vimu3g00166 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 785 IPR027417 -
Vimu3g00166 860 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Vimu3g00166 860 Pfam Clp amino terminal domain, pathogenicity island component 23 52 IPR004176 -
Vimu3g00166 860 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00166 Vimu-Chr3 1399338 1404036 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00166 - - var:108320189 1627.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00166 3 1399338 1404036 Vimu6g01713 6 15659042 15664531 ECH
Vimu3g00166 3 1399338 1404036 Vimu1g00904 1 6284507 6290406 ECH
Vimu3g00166 3 1399338 1404036 Vimu3g00166 3 1399338 1404036 ECH
Vimu3g00166 3 1399338 1404036 Vimu2g02184 2 16724279 16730566 ECH