Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01857 ATGTGGGACCCATTAAAGTTTATCTCACATGCTCACCATGCAGGCTACTATTCACTTCCTCGTTCCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAATCACGAAAGAACAAGAATGATCCTGTTGTGATATGGTTGACTGGAGGACCAGGATGTGGAAGTGAATTAGCTATGTTCTACGAAAATGGTCCTTTTCATATTACCAAGAACTTGTCTCTTACATGGAATGATTACGGCTGGGATCAGGCATCAAATATTATATTTGTGGACCAACCAACTGGGACAGGTTTTAGTTACTCTTCTGATAACAGCGTCCTTCGCCGTGACGAAACCGGCGTTGGCACTGATTTATATGATTTCTTGCAGGAGTTTTTCAAGGCGCATCCTAATTTCGTTAAGAATGACTTCTACATCTTTTTGGTGAATCATATGCTGGACACTATGTTCCTGCACTTGCATCTCGGATTAACAGGTCTTGCTATCGGTAACGGGTTTACCAATCCTGCAATTCAATACGAAGCATACCCAGATTTTGCATTACAAAGCAGAATAATTACAGAGGCTCAGTACGACATCCTCAGAAAGTCAGTCACACTCTGTGAACGAGCCATTAAAAATTGCGGTGAAAAGAGCTGCCTCGTTGCGTTAGAAATTTGTGAAAACATCTTCGGTCGTATATTGTCTTTTGCCGGCAACATTAATTACTTTGACATCAGAAAGAAGTGTGAGGGGAGTATGTGCTACAACTTCACAAACGTGGAGACGTTGCTAAACATGCAGAAAGTGAAGAGTGCTTTAGGTGTGAGGGGTGACTTGAAGTATAACTTATGCAGTATAAGAGTTCATAATGCTATGGCGGAAGACACGATGAGAAACCTAGAAGTGAGGATTCCTGCTCTTCTCGAAGATGGAATCAAGTTGCTGGTGTATGCTGGGGAAAAAAGATCTCTTGTTGATGTGATTCTGATTTTGATAGGGAATTCAAGATGGGTTCATGCAATGAAGTGGTCAGGCCAAAAGGCCTTTGGGAAATCTCCTGTTGTGAAATTCGTGGTTGATGGTGCTGTAGCAGCTTCTCTTAGAAGCCATGGACCTCTCTCTTTCCTCAAGGTACATGAGGCTGAACACTTGGTCCCTATGGATCAACCAAAAGTTTCGCTTCAGATGTTCAAACGTTGGATGGGAGGGAAACTGAAAAACAAAGGAGATAATTAA 1215 0.4198 MWDPLKFISHAHHAGYYSLPRSKAARMFYFFFESRKNKNDPVVIWLTGGPGCGSELAMFYENGPFHITKNLSLTWNDYGWDQASNIIFVDQPTGTGFSYSSDNSVLRRDETGVGTDLYDFLQEFFKAHPNFVKNDFYIFLVNHMLDTMFLHLHLGLTGLAIGNGFTNPAIQYEAYPDFALQSRIITEAQYDILRKSVTLCERAIKNCGEKSCLVALEICENIFGRILSFAGNINYFDIRKKCEGSMCYNFTNVETLLNMQKVKSALGVRGDLKYNLCSIRVHNAMAEDTMRNLEVRIPALLEDGIKLLVYAGEKRSLVDVILILIGNSRWVHAMKWSGQKAFGKSPVVKFVVDGAVAASLRSHGPLSFLKVHEAEHLVPMDQPKVSLQMFKRWMGGKLKNKGDN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01857 404 PRINTS Carboxypeptidase C serine protease (S10) family signature 89 99 IPR001563 GO:0004185|GO:0006508
Vimu5g01857 404 PRINTS Carboxypeptidase C serine protease (S10) family signature 76 88 IPR001563 GO:0004185|GO:0006508
Vimu5g01857 404 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 149 IPR001563 GO:0004185|GO:0006508
Vimu5g01857 404 PRINTS Carboxypeptidase C serine protease (S10) family signature 366 379 IPR001563 GO:0004185|GO:0006508
Vimu5g01857 404 SUPERFAMILY alpha/beta-Hydrolases 8 397 IPR029058 -
Vimu5g01857 404 Pfam Serine carboxypeptidase 9 395 IPR001563 GO:0004185|GO:0006508
Vimu5g01857 404 Gene3D alpha/beta hydrolase 4 403 IPR029058 -
Vimu5g01857 404 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 12 383 IPR001563 GO:0004185|GO:0006508
Vimu5g01857 404 FunFam Serine carboxypeptidase 3 27 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01857 Vimu-Chr5 30432951 30434910 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01857 K16298 - gmx:100798795 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03210 6 28580311 28581932 Vimu5g01857 5 30432951 30434910 ECH
Vimu3g00707 3 7827872 7830042 Vimu5g01857 5 30432951 30434910 ECH
Vimu5g01857 5 30432951 30434910 Vimu5g01857 5 30432951 30434910 ECH
Vimu4g00683 4 5263235 5266601 Vimu5g01857 5 30432951 30434910 PCT