Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03210 ATGCTGATTGGGAATCCTCTAATGGAATTTGACACTGATTTGAACTCCAAAGCTGAATTCCTTTGGTCCCACGGACTGATTTCAGATTCAACTTATGATCTCTTCACCAGAGTCTGCAACTACTCAACCATTAGGAGACAAATGATAAGTAGGAATCTTAGTGAAATTTGTGAAAACATAAATACACTGGTGTTCACTGAGGTTAGCAACTATATAGATCAATATGATGTCACTCTTGATGTGTGTTTGTCATCAGTAGGAGGATGGACACAAGTGTACGGAAACATCTTATCTTATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTTTCTCAACCAAAAAGATCACTGCGGCTACTTAAAGCATTTCTTGAAGGAAAGCCACTTCCTGTTAAATAA 402 0.3881 MLIGNPLMEFDTDLNSKAEFLWSHGLISDSTYDLFTRVCNYSTIRRQMISRNLSEICENINTLVFTEVSNYIDQYDVTLDVCLSSVGGWTQVYGNILSYATIRGASHEAPFSQPKRSLRLLKAFLEGKPLPVK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03210 133 Gene3D alpha/beta hydrolase 82 131 IPR029058 -
Vimu6g03210 133 SUPERFAMILY alpha/beta-Hydrolases 2 131 IPR029058 -
Vimu6g03210 133 Pfam Serine carboxypeptidase 1 83 IPR001563 GO:0004185|GO:0006508
Vimu6g03210 133 Pfam Serine carboxypeptidase 85 127 IPR001563 GO:0004185|GO:0006508
Vimu6g03210 133 ProSitePatterns Serine carboxypeptidases, histidine active site. 97 114 IPR033124 GO:0004185
Vimu6g03210 133 Gene3D alpha/beta hydrolase 1 81 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03210 Vimu-Chr6 28580311 28581932 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03210 K16297 - gmx:100800430 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03210 6 28580311 28581932 Vimu5g01857 5 30432951 30434910 ECH
Vimu6g03210 6 28580311 28581932 Vimu6g03210 6 28580311 28581932 ECH