Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00683 ATGGCATCATCATCATCCTCAAGGTTCCTCTGCACATCTTTTATGTTCTTCTTTCTCATCTCCAATAGCATTCCACCTTCTTTCTCCTCTCCAACTCACCACACAAACAGCGACCTTAGTTTTTCTACAACGCCAGAAAAACTCATAAGAGGGTTCAACCTCTTCCCCAAAGACCCCATTAACACACTCGACAGTGACTCTCTTCTTGTGGCAGGAAACATTGTGGAGAAGAAGTTAACTTTTCCTAGCCTTGTTGCTCCAGGGTCTTCTGTGGAAGAACTTGGTCACCATGCAGGCTATTATAGCCTTCCTCGTTCTAAAGCTGCAAGAAAGGATGATCCTGTTGTCATATGGTTGACTGGAGGACCAGGATGTAGCAGTGAACTAGCTTTGTTTTACGAAAATGGTCCTTTTCAGCTTACCAAGAACTTGTCCCTTGTGTGGAATGACTATGGTTGGGACAAGGCATCAAATATTATATTTGTTGACCAACCCACTGGAACAGGGTTCAGCTATACTTCTGATGAGAGTGACATTCGCCATGATGAAGAGGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGCATTTTTCAAGGAGCATCCTCAATTCACTAAGAATGACTTTTATATTACTGGAGAGTCATATGCTGGGCACTACATTCCAGCTCTTGCATCCAGGGTTCACCAAGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTAAAGGGTTTTGCTATTGGTAATGGGTTAACCAATCCTGAAATTCAGTACCAGGCGTACACAGACTATGCATTAGACAGAGGACTAATTCAAAAGGCTGACTATAATAGCATCAACAAGTTGCTCCCATCATGCAAGCAGGCCATAGAAGATTGCGGCACTGAAGGTGGAGAAACCTGTGTAACTTCATTATATGTCTGCAATAAGATATTCAATAGGATAATGAACATTGCTGGAGATGTTAATTACTATGACATTAGAAAGAAATGTGTGGGAGATCTGTGTTATGACTTTTCTGAGATGGAGGAATTCTTAAACAAGAAGACAGTGAGAGATGCTTTAGGTGTTGGGGACTTAGACTTCGTTTCATGCAGTAGCACAGTGTATAGCGCTATGATGCAAGACTGGATGAGAAATCTAGAAGCCGGTATTCCAGCACTTCTAGAGGATGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCAAGCAATGGAGTGGTCTGGTCAAAAAGAATTTGGGGCGTCTGGTGCAGTCCCATTTCTGGTGGATGGTGCAGAAGCAGGCACGCTGAAAAGCCATGGACCTCTCGCTTTCCTGAAGGTTTGTGTTCAAGACTTTACTGCTATGCGAGAAATAGTGAATTCACTTCTGGTATACGAGGCTGGTCACATGGTGCCTATGGATCAACCAAAAGCTGCACTTACAATGCTAAGAAGCTGGATGCAAGGGAAATTGACAATGACAAAGAATGGGGATAACGTCTCTCCTAAATGA 1536 0.4271 MASSSSSRFLCTSFMFFFLISNSIPPSFSSPTHHTNSDLSFSTTPEKLIRGFNLFPKDPINTLDSDSLLVAGNIVEKKLTFPSLVAPGSSVEELGHHAGYYSLPRSKAARKDDPVVIWLTGGPGCSSELALFYENGPFQLTKNLSLVWNDYGWDKASNIIFVDQPTGTGFSYTSDESDIRHDEEGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPALASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYQAYTDYALDRGLIQKADYNSINKLLPSCKQAIEDCGTEGGETCVTSLYVCNKIFNRIMNIAGDVNYYDIRKKCVGDLCYDFSEMEEFLNKKTVRDALGVGDLDFVSCSSTVYSAMMQDWMRNLEAGIPALLEDGIKVLVYAGEEDLICNWLGNSRWVQAMEWSGQKEFGASGAVPFLVDGAEAGTLKSHGPLAFLKVCVQDFTAMREIVNSLLVYEAGHMVPMDQPKAALTMLRSWMQGKLTMTKNGDNVSPK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00683 511 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 100 484 IPR001563 GO:0004185|GO:0006508
Vimu4g00683 511 Pfam Serine carboxypeptidase 97 497 IPR001563 GO:0004185|GO:0006508
Vimu4g00683 511 FunFam Carboxypeptidase 83 507 - -
Vimu4g00683 511 SUPERFAMILY alpha/beta-Hydrolases 95 498 IPR029058 -
Vimu4g00683 511 Gene3D alpha/beta hydrolase 84 509 IPR029058 -
Vimu4g00683 511 ProSitePatterns Serine carboxypeptidases, serine active site. 211 218 IPR018202 GO:0004185
Vimu4g00683 511 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 172 IPR001563 GO:0004185|GO:0006508
Vimu4g00683 511 PRINTS Carboxypeptidase C serine protease (S10) family signature 467 480 IPR001563 GO:0004185|GO:0006508
Vimu4g00683 511 PRINTS Carboxypeptidase C serine protease (S10) family signature 197 222 IPR001563 GO:0004185|GO:0006508
Vimu4g00683 511 PRINTS Carboxypeptidase C serine protease (S10) family signature 149 161 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00683 Vimu-Chr4 5263235 5266601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00683 K16298 - gmx:100785987 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00683 4 5263235 5266601 Vimu4g00683 4 5263235 5266601 ECH
Vimu4g00683 4 5263235 5266601 Vimu5g01857 5 30432951 30434910 PCT
Vimu5g01855 5 30423998 30424324 Vimu4g00683 4 5263235 5266601 PCT