Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00668 ATGAGGAAAAACAACAACATAATAATGAGCTTAAGAGGTATAACGTTGTGGTGTGTTTGGTTGTGTTTGTGGGAAGTATCATGGGGAGCTGTAAAACAGTACAAGTTTGATGTACAGTACATGTATGGTGAACCAGATTGCGTGGAGCAAGTTGTGATCGGAATCAATGGTCACTTTCCGGGCCCGACCATAACAGCAGAAGAAGGAGACACCCTTCATATTATTCTCACCAACAACCTCGTCACAGAAGGAACAGTTCTTCACTGGCATGGAATTAGACAGTATGGAACGCCATGGGCAGATGGAACTGCTTCCATTTCTCAGTGTGCTATAGCCCCAGGGCAAACTTTTCATTACAGATTCACAGTTGACAGGGCAGGTACATACTTCTACCATGGACACTATGGTTTGCAGAAAACAGCAGGATTGTATGGTTCTCTGATAGTGAATTTAGCAAAGGGAAAGAAAGAAGCATTTCACTATGATGGTGAACTCAACCTCCTCTTGAGTGACTGGTGGCACAAAACCACACTAGAACAAGAGGTTGGTCTCTCCTCCATTCCATTCAGATGGGTCAATGAACCTCAGTCTCTGCTTATCAATGGAAGAGGACAATACAATTGTTCGTTGGCAGCTAATGTTATGAAGACATCGTTGTCTGAGTGTAAGTTCAGAGGCAATGAAGAATGTGCTCCCCAAATTTTTGATGTTCATCCAAACAAGACCTATAGAATTAGAATTGCTAGTGCCACTTCCTTGGCATCTCTCAACTTGGCCATTGGGCACAGATTGGTGGTGGTGGAAGCCGATGGAAACTACGTGAAACCATTTACTGTTGATGACATAGACATATATTCAGGTGAAACCTATTCAGTTCTCCTCAGAACAAATCAAGATCCAAAGAAGAATTATTGGATTTCAATCGGTGTTAGAGGAAGAAAACCTAACACCCCACAAGGATTAACTATCCTAAATTACAAAACAAACTCTGCCACAGTTCTTCCTACTTCTCCACCACCAATAACACCTCAATGGGATGATTACAATCGTAGCAAAACATTCACTTACAATATTTTTGGCCTCAAGGGAACCCAAAAACCTCCTAAATACTATGATCGTAGACTTCTCCTTCTCAACACACAAAACCTCGTACGTGGTTACACTAAGTGGGCCATCAACAATGTCTCCTTAACATTGCCATCAATTCCTTACCTAGCCTCTGTTAAGTTTAACGTTAATGGCTCCTTTGACACTAAAATCCCTCCAAACACATTCTCAGAGGGTTATGACATCTACAACCCTCCCCTGAACCCTAATGCAAACACTGGTAGTGGGGTTTACATGTTCCAGTTAAACCAAGTGGTAGATGTCATACTGCAAAATGCCAATGTAATGAAGGGGCAAAACAGTGAGATTCACCCTTGGCATTTGCATGGGCATGACTTTTGGGTTTTGGGGTATGGAGATGGCAAGTTTCAACAGAGTGATGAAAGAAAATTCAACTTGAAGAACCCACCATTGAGGAACAATGTAGTGGTATTCCCATATGGTTGGACTGCTTTGAGGTTTAGGGCAGATAACCCTGGAGTTTGGGCCTTCCATTGTCACATTCAGCCTCATTTATACATGGGAATGGGTGTCGTTTTTGCCGAGGCTCTTTTAAATGTTAAGCGAATACCTAATCAGGCTCTAGCATGTGGCCTTCTTAGGAATGTGTCAATACATAAGAAACATAACTAA 1740 0.4207 MRKNNNIIMSLRGITLWCVWLCLWEVSWGAVKQYKFDVQYMYGEPDCVEQVVIGINGHFPGPTITAEEGDTLHIILTNNLVTEGTVLHWHGIRQYGTPWADGTASISQCAIAPGQTFHYRFTVDRAGTYFYHGHYGLQKTAGLYGSLIVNLAKGKKEAFHYDGELNLLLSDWWHKTTLEQEVGLSSIPFRWVNEPQSLLINGRGQYNCSLAANVMKTSLSECKFRGNEECAPQIFDVHPNKTYRIRIASATSLASLNLAIGHRLVVVEADGNYVKPFTVDDIDIYSGETYSVLLRTNQDPKKNYWISIGVRGRKPNTPQGLTILNYKTNSATVLPTSPPPITPQWDDYNRSKTFTYNIFGLKGTQKPPKYYDRRLLLLNTQNLVRGYTKWAINNVSLTLPSIPYLASVKFNVNGSFDTKIPPNTFSEGYDIYNPPLNPNANTGSGVYMFQLNQVVDVILQNANVMKGQNSEIHPWHLHGHDFWVLGYGDGKFQQSDERKFNLKNPPLRNNVVVFPYGWTALRFRADNPGVWAFHCHIQPHLYMGMGVVFAEALLNVKRIPNQALACGLLRNVSIHKKHN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00668 579 Pfam Multicopper oxidase 38 150 IPR011707 GO:0005507
Vimu1g00668 579 ProSitePatterns Multicopper oxidases signature 1. 529 549 IPR033138 -
Vimu1g00668 579 SUPERFAMILY Cupredoxins 370 552 IPR008972 -
Vimu1g00668 579 FunFam L-ascorbate oxidase 365 577 - -
Vimu1g00668 579 Gene3D - 365 579 IPR008972 -
Vimu1g00668 579 NCBIfam L-ascorbate oxidase 32 567 IPR017760 GO:0005507|GO:0005576
Vimu1g00668 579 SUPERFAMILY Cupredoxins 33 175 IPR008972 -
Vimu1g00668 579 CDD CuRO_3_AAO 372 560 IPR034267 GO:0005507
Vimu1g00668 579 FunFam L-ascorbate oxidase 159 364 - -
Vimu1g00668 579 Pfam Multicopper oxidase 167 328 IPR001117 -
Vimu1g00668 579 PANTHER MULTI-COPPER OXIDASE 47 548 IPR045087 -
Vimu1g00668 579 SUPERFAMILY Cupredoxins 159 362 IPR008972 -
Vimu1g00668 579 Pfam Multicopper oxidase 441 551 IPR011706 GO:0005507|GO:0016491
Vimu1g00668 579 ProSitePatterns Multicopper oxidases signature 2. 534 545 IPR002355 GO:0005507
Vimu1g00668 579 Gene3D - 25 150 IPR008972 -
Vimu1g00668 579 Gene3D - 159 364 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00668 Vimu-Chr1 4304681 4308055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00668 K00423 - gmx:102666289 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00668 1 4304681 4308055 Vimu1g00668 1 4304681 4308055 ECH
Vimu6g02261 6 19791642 19795833 Vimu1g00668 1 4304681 4308055 ECH
Vimu3g00576 3 5957485 5960301 Vimu1g00668 1 4304681 4308055 ECH
Vimu2g02660 2 23260121 23264106 Vimu1g00668 1 4304681 4308055 PCT