Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00576 ATGAGAGCAGGAGTTTGCAGCATACAGCTACAGGCTTTGACACCAGAGGCTGCAACCCTAGTTAAGCAAGCTGTTACTCTTGCCACAAGAAGAGGACATGCTCAAGTTACACCTCTTCATATTGCTACTGTCATGCTTGCTACTTCCACTGGCCTTCTCCGCAAAGCTTGCCTTCAGTGCCACTCTCATCCTCTCCAATACAAGGCATTAGAACTTTGCTTCAATGTTTCCCTCAACCGTTTGCCAGCCTCCACACCAAGCCCTCTTCTCAGTGCTTCATATTCCGCCACTCCCTCACTCTCTAATGCCTTGGTTGCAGCCTTCAAGCGTGCTCAGGCTCACCAACGCCGTGGTTCCATTGAGAACCAGCAGCAACCCATTTTGGCCTTGAAGATTGAGGTGGAGCAGCTCATAGTCTCTATCCTTGATGACCCTAGCATTAGCAGGGTCATGAGAGAAGCTGGTTTCTCTAGTGCCCTTGTCAAAGCCAGGGTTGAACAAGCTGTTTCAATGGACGTTTGTTCACAGGAACAAGCTTCCCAGGAAAACACCACCAAGCTTCAAGTTCTTGGTGGTAGGAACACGTCCCCACCAAGATCTTTTAGTCAATTCGGGGGCTCATTCATCAAGTCTGTGGACCATGTTAATGATGAAGTTACTGGTGTAGATGATGTAACAAGTGCTTTGAATTCACTTGTGAGCAAGAGGAGAAACACGGTGATTGTTGGGGAGAGTCTTGCTAGTGCTGAGGGAGTAGCTAGGGGAGTGATGCAAAGGTTGGAGAATCCTCAAGGAGAGTTGAGGTTTGTGCAATTTGTGAGTCTTCCTCTTTTCTCCTTCAGGAACATTAGCAAGGAGGAGGTTGAAAGGAAACTGCTAGAGCTTAGAAGCCTGGTAAAAAGTCACGTGGGAAGAGGGTTCATTCTATACTTGGGTGATCTCAAGTGGTTGTTTGAGTTCTGGTCAAGTTATTGTGAGCAAAGAACAAACTACTACAGTTCTGTGGAGCATATGGTGATGGAGCTTAAAAAATTAATCAGTGGAAATGAGGAGAATGGTAGATTGTGGCTTATGGGGATTGCAACTTTTAGAACATACATGAAGGGCAAAGCATGTCACCCTTCCCTTGAAACTATTTGGGATCTTCACCCTTTCACAGTTCCAGTTGGTAGCCTGAGCCTCGGTTTAAATTTTGATAGTGATTCTCAAGTTCAGGAGAGAAGCAAAGCAACATTCAAGGAATCTTTTGAAGAACGGGCCAAAGTGCGCAAACATTTAACTTGCTGCAGAGATTGCTCATTGAATTTTGAAAAAGAAGCTAAAAGCATCGCCAATAGTATTACTATAAGCAAGAGAGACTGCACTACTAGCTTGCCAACATGGCTCAAAAATTGCAAGGAAGAGAGAAGTCACGTGATGGATGATCAGGAAAATGCTAAGCTTAAGGAAATAGGCAAGAAATGGAACTCATTCTGCAGTTCAGCACATGGTTATCCCTCCAATCTTGAGAAAGAATTTTTGTTCATTTCATCCTCGCCTTCATCACCTACTTCAGCCTCTTCACATGAAAGAAAGTCTAGCTTCAATCTCACCCACCTAAATTGGCCAGTCATTTCTGAACCAAAAGAAGTGCCTAAAGAATGTCAGTTATACACTGAGACTACTGTTAGTGATGAGTGTTATGAAGGTAACTTGATAATGTTCATGCCAGAGAGAAACATTCCTAGGCCAGATCTTTTGTCCAATCCCAATTCTAGTCCCAATTCTGCTTCTTCAAGTGAGGCAGCTGAAGGTTTGGATAGCACTCAAATGTTCAAGGACCATAATGACGAGAATCTAAAGATTCTCAGCGATGCATTGCAGAAAAAGGTTCCACAAAATAAAGAAATGGCTAAGGAGATTGCAAGCAGTGTGCTTCTTTCCAGGTCAGGAATGAGAAAAGGAGAGAATCACTTGGTGAAAAGAGAAGATAGACAAGAAACTTGGTTTTTCTTTCTAGGTATGGATTCTCGAGCAAAAGAAATGGTCTCAAAAGAGCTAGCTAAAGTTGTCTTTGGCTCTTACAGCAACTTTGTCCCCATTGGTGTAAGCAGTTTTTCTACCTCAAGAGGTGGTGATTCCACGAACGAGGAGTCCAAAAATAAAAGACCACGAGATGAGTTTGGTGGCAGTTATCTTCAGAGATTTGGAGAAGCTGTGAATGAGAATCCTCATAGGGTGTTCTTCATGGAAGATTTGGAGCAAGTTGATCACTTTTCAAAAAAGGGTGTTAAGAAAGCAATTGAAAATGGAACTATAACCCTTCCTTGTGGTGAATCTGTGCCTCTCAAGGATGCCATTGTCATTTTCAGCTGTGAAAACTTCAGTTCAGCGTCAAAAACCTCTTCTCCTACAAGAACTACTTCTCCATCTTCTGATGAAAACATGGAAAAAGAGAATCTTAATAACTCAGAAGAGAAAATTCCATGCCTTTCTTTGGATCTGAACATGGCCATTGAAGTTGATGCGCAAAAATATGTGCATCTAGATGAAGTCACTGCTGAGATTCTGGAGTTAGTTGATAAGCAAATTAAGTTTCAAGTATGA 2586 0.4273 MRAGVCSIQLQALTPEAATLVKQAVTLATRRGHAQVTPLHIATVMLATSTGLLRKACLQCHSHPLQYKALELCFNVSLNRLPASTPSPLLSASYSATPSLSNALVAAFKRAQAHQRRGSIENQQQPILALKIEVEQLIVSILDDPSISRVMREAGFSSALVKARVEQAVSMDVCSQEQASQENTTKLQVLGGRNTSPPRSFSQFGGSFIKSVDHVNDEVTGVDDVTSALNSLVSKRRNTVIVGESLASAEGVARGVMQRLENPQGELRFVQFVSLPLFSFRNISKEEVERKLLELRSLVKSHVGRGFILYLGDLKWLFEFWSSYCEQRTNYYSSVEHMVMELKKLISGNEENGRLWLMGIATFRTYMKGKACHPSLETIWDLHPFTVPVGSLSLGLNFDSDSQVQERSKATFKESFEERAKVRKHLTCCRDCSLNFEKEAKSIANSITISKRDCTTSLPTWLKNCKEERSHVMDDQENAKLKEIGKKWNSFCSSAHGYPSNLEKEFLFISSSPSSPTSASSHERKSSFNLTHLNWPVISEPKEVPKECQLYTETTVSDECYEGNLIMFMPERNIPRPDLLSNPNSSPNSASSSEAAEGLDSTQMFKDHNDENLKILSDALQKKVPQNKEMAKEIASSVLLSRSGMRKGENHLVKREDRQETWFFFLGMDSRAKEMVSKELAKVVFGSYSNFVPIGVSSFSTSRGGDSTNEESKNKRPRDEFGGSYLQRFGEAVNENPHRVFFMEDLEQVDHFSKKGVKKAIENGTITLPCGESVPLKDAIVIFSCENFSSASKTSSPTRTTSPSSDENMEKENLNNSEEKIPCLSLDLNMAIEVDAQKYVHLDEVTAEILELVDKQIKFQV 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00576 861 ProSiteProfiles Clp repeat (R) domain profile. 10 172 IPR004176 -
Vimu3g00576 861 MobiDBLite consensus disorder prediction 578 599 - -
Vimu3g00576 861 Gene3D - 9 171 IPR036628 -
Vimu3g00576 861 MobiDBLite consensus disorder prediction 790 816 - -
Vimu3g00576 861 MobiDBLite consensus disorder prediction 576 599 - -
Vimu3g00576 861 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 860 - -
Vimu3g00576 861 Gene3D - 591 856 IPR027417 -
Vimu3g00576 861 SUPERFAMILY Double Clp-N motif 13 165 IPR036628 -
Vimu3g00576 861 MobiDBLite consensus disorder prediction 790 810 - -
Vimu3g00576 861 Pfam Clp amino terminal domain, pathogenicity island component 132 169 IPR004176 -
Vimu3g00576 861 Pfam Clp amino terminal domain, pathogenicity island component 24 55 IPR004176 -
Vimu3g00576 861 MobiDBLite consensus disorder prediction 700 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00576 Vimu-Chr3 5957485 5960301 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00576 - - gmx:100775479 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00576 3 5957485 5960301 Vimu3g00576 3 5957485 5960301 ECH
Vimu3g00576 3 5957485 5960301 Vimu1g00668 1 4304681 4308055 ECH