Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02660 ATGATTGGGTTGAGAGCAGTTTTTGTTTGGTGCATATGGTTAGGGTTGATAGAGTTATCAGTAGGAGGAAGGGTGAGGCACTACAAGTTTGATGTGGAGTACATGATCAAAAAACCAGATTGCTTAGAACACGTTGTGATGGGAATCAACGGCCAGTTTCCAGGGCCAACCATTAGGGCTGAAGTTGGTGACACTCTTAACATTGCTCTCACCAACAAGCTCTTCACTGAGGGAACTGTTATTCACTGGCATGGAATCAGACAGGTTGGAACTCCCTGGGCAGATGGAACTGCTGCAATTTCACAGTGTGCTATAAATCCAGGAGAAACTTTTAACTACAGGTTTATAGTTGACAGGCCTGGAACATACTTTTATCATGGACACCATGGTATGCAAAGAGCAGCAGGTTTGTATGGTTCACTGATAGTGGATTTGCCAAAAGGACAAAACGAATCGTTTCATTATGATGGTGAGTTCAACCTTCTTCTAAGTGATTTGTGGCACATCAGCTCACATGAACAAGAAGTTGGCCTCTCCTCAAAACCATTAAAATGGATTGGTGAACCTCAGACTCTGTTGATAAATGGAAGGGGACAATTCAATTGTTCTCTGGCAGCTAAATTCGGAAACACCACTCTACCAGAGTGCCAATTTAAAGGTGGTGAAGAATGTGCCCCACAAATTCTTCATGTGGAGCCAAACAAGACCTACAGAATTAGGGTTGCCAGTACCACTTCCCTAGCTGCACTCAACTTAGCCATTTCGGATCACAAACTTGTTGTGGTGGAAGCTGATGGAAACTATGTAACACCATTTGTGGTTGATGACATGGATATTTACTCGGGTGAGACCTACTCGGTTCTCCTTCGTACAGATCAAGATCCAAACAGAAACTATTGGCTTTCAATTGGAGTTAGAGGAAGAAAACCTAACACCACACAAGGCTTAACCATTCTGAACTACAAGACAATTTCTGCTTCAGTTTTGCCAACTTCTCCTCCACCCGTCACACCCCTTTGGAATGATTTTGAACGTAGCAAAGCATTCACTAAGAAAATCATAGCCAAGATGGGAACTCCACAACCTCCAAAACGTTCTGATCGTACAATTTTCCTTCTCAACACCCAAAATCGTGTTGATGGGTTCACCAAATGGTCCATTAACAATGTATCCTTAACATTGCCAGCAACCCCTTACTTGGGTTCCATCAAGTTCAAAATAAACAATGCTTTTGATCAAACACCTCCACCTGTGACTTTTTCTCAAGACTATGACATTTTCAACCCTCCTGTAAACCCTAACTCAACTATTGGCAATGGGGTGTACAAGTTCAACCTTGATGAGGTTGTTGATGTGATATTGCAAAATGCAAACCAATTGAGTGGAAATGGTAGTGAAATTCACCCTTGGCACTTGCATGGGCATGACTTTTGGGTTTTGGGATATGGAGAAGGCAAATTCAAACAAGGTGATGAGAAGAAATTCAACTTGACACATGCACCATTGAGGAATACTGCTGTAATATTTCCATATGGATGGACTGCATTGAGGTTTAAGGCAGATAACCCAGGAGTTTGGGCCTTCCATTGCCACATTGAACCACATTTGCACATGGGAATGGGTGTGATTTTTGCTGAGGCTGTTCACAAAGTTGGAAAAATTCCAAGGGAAGCATTAACTTGTGGGCTTACTGGGAAGAAACTAGTAGAAAATGGACACTACTAA 1725 0.4226 MIGLRAVFVWCIWLGLIELSVGGRVRHYKFDVEYMIKKPDCLEHVVMGINGQFPGPTIRAEVGDTLNIALTNKLFTEGTVIHWHGIRQVGTPWADGTAAISQCAINPGETFNYRFIVDRPGTYFYHGHHGMQRAAGLYGSLIVDLPKGQNESFHYDGEFNLLLSDLWHISSHEQEVGLSSKPLKWIGEPQTLLINGRGQFNCSLAAKFGNTTLPECQFKGGEECAPQILHVEPNKTYRIRVASTTSLAALNLAISDHKLVVVEADGNYVTPFVVDDMDIYSGETYSVLLRTDQDPNRNYWLSIGVRGRKPNTTQGLTILNYKTISASVLPTSPPPVTPLWNDFERSKAFTKKIIAKMGTPQPPKRSDRTIFLLNTQNRVDGFTKWSINNVSLTLPATPYLGSIKFKINNAFDQTPPPVTFSQDYDIFNPPVNPNSTIGNGVYKFNLDEVVDVILQNANQLSGNGSEIHPWHLHGHDFWVLGYGEGKFKQGDEKKFNLTHAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVGKIPREALTCGLTGKKLVENGHY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02660 574 SUPERFAMILY Cupredoxins 153 357 IPR008972 -
Vimu2g02660 574 ProSitePatterns Multicopper oxidases signature 1. 524 544 IPR033138 -
Vimu2g02660 574 Gene3D - 17 146 IPR008972 -
Vimu2g02660 574 SUPERFAMILY Cupredoxins 16 171 IPR008972 -
Vimu2g02660 574 Gene3D - 360 572 IPR008972 -
Vimu2g02660 574 PANTHER MULTI-COPPER OXIDASE 41 544 IPR045087 -
Vimu2g02660 574 Pfam Multicopper oxidase 159 322 IPR001117 -
Vimu2g02660 574 ProSitePatterns Multicopper oxidases signature 2. 529 540 IPR002355 GO:0005507
Vimu2g02660 574 Gene3D - 153 359 IPR008972 -
Vimu2g02660 574 FunFam L-ascorbate oxidase 153 359 - -
Vimu2g02660 574 SUPERFAMILY Cupredoxins 363 561 IPR008972 -
Vimu2g02660 574 FunFam L-ascorbate oxidase 360 572 - -
Vimu2g02660 574 FunFam L-ascorbate oxidase 14 145 - -
Vimu2g02660 574 Pfam Multicopper oxidase 437 547 IPR011706 GO:0005507|GO:0016491
Vimu2g02660 574 NCBIfam L-ascorbate oxidase 25 564 IPR017760 GO:0005507|GO:0005576
Vimu2g02660 574 Pfam Multicopper oxidase 35 145 IPR011707 GO:0005507
Vimu2g02660 574 CDD CuRO_3_AAO 366 555 IPR034267 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02660 Vimu-Chr2 23260121 23264106 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02660 K00423 - gmx:547647 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02660 2 23260121 23264106 Vimu2g02660 2 23260121 23264106 ECH
Vimu2g02660 2 23260121 23264106 Vimu1g00668 1 4304681 4308055 PCT