Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00724 ATGGCCATAAGAAAATCCACTAAGCTACCCCAAGCAGAAGTGATAAAGCAAATAGTGAGAAGGTGTTCGAGTTTTGGAAAGAAACAGGGATACGATGAAGAGGGTCTTCCAGAAGATGTGCCAAAAGGGCACTTTGCAGTTTATGTTGGTGAAAACAGGACAAGATATATTGTCCCAATTTCATGGTTGGCTCATCCACAGTTTCAAATTCTTCTCCAAAGAGCTGAAGAGGAGTTTGGTTTCAATCATGATATGGGCCTTACAATCCCATGTGATGAAGTTGTTTTTGAGTTTCTTACCTCAATGATTAGATCATAA 318 0.3962 MAIRKSTKLPQAEVIKQIVRRCSSFGKKQGYDEEGLPEDVPKGHFAVYVGENRTRYIVPISWLAHPQFQILLQRAEEEFGFNHDMGLTIPCDEVVFEFLTSMIRS 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00724 105 Pfam Auxin responsive protein 27 103 IPR003676 GO:0009733
Vimu11g00724 105 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 37 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00724 Vimu-Chr11 7720754 7721071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00724 37 105 Calmodulin-binding Proteins AT3G43120 49.275 2.21e-21 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00724 K14488 - gmx:100500218 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03475 10 44483466 44484335 Vimu11g00724 11 7720754 7721071 ECH
Vimu5g02438 5 34991965 34992279 Vimu11g00724 11 7720754 7721071 ECH
Vimu11g00724 11 7720754 7721071 Vimu11g00724 11 7720754 7721071 ECH
Vimu10g03687 10 45921939 45922262 Vimu11g00724 11 7720754 7721071 ECH