Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02438 ATGGCCATTAGAAAATCAAACAAGCTTCCACAACATGCAGTCTTGAAGCAGATCCTTAAGAGGTGTTCAAGCCTAGGAAAGAAAAACGGGTACGATGATGATGGCCACCCCGGTGATGTCCCAAAAGGCCACTTTGCTGTTTATGTGGGTGAAAACAGAACTAGGTACATTGTGCCAATCTCATTCCTCGCTCACCCCGAGTTCCAATCCCTCCTTCGACAAGCCGAAGAAGAGTTTGGCTTCGATCACGAGATGGGTCTCACTATTCCTTGCGAAGAAGTTGTCTTCAGGTCTCTAACATCCTCGTTGAGATGA 315 0.4698 MAIRKSNKLPQHAVLKQILKRCSSLGKKNGYDDDGHPGDVPKGHFAVYVGENRTRYIVPISFLAHPEFQSLLRQAEEEFGFDHEMGLTIPCEEVVFRSLTSSLR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02438 104 Pfam Auxin responsive protein 27 103 IPR003676 GO:0009733
Vimu5g02438 104 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 38 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02438 Vimu-Chr5 34991965 34992279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02438 19 99 Calmodulin-binding Proteins AT3G43120 49.383 4.64e-21 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02438 K14488 - gmx:100790342 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02438 5 34991965 34992279 Vimu5g02438 5 34991965 34992279 ECH
Vimu5g02438 5 34991965 34992279 Vimu11g00724 11 7720754 7721071 ECH