Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01036 ATGTCTTCTGCTGGTATAAGTACCCTTAGTCCTGTTTCGAGGGAGACACTGTTGTCTCCGACAAATGGATTCTGTAATCCACTGCACTCGTCTGTGGATCATCATGAGTTTATCTTTGTGTATCTTTCGTATTCGGGGTCTTTGTCTCCTATGCGTGTTCTACCCTCGGATACAATTGAGTCTGTGAAACTTAAAATTCAAAGGAATGAGGGAGTGACAAACAAGCAGAAGTTGGTTTGTAATGGGCGTGAGTTGTCGCGGAGCAATTCGCTGCTGAAAGACTACGGAGTTACGGAAGGAAATGTTTTGCATTTGGTGATTCGACTGACGGATCTTCAGACTATTAGCGTGAGGACTTGTTCTGGGAAGGAGTTTTCGTTTCAGGTTGAAAGATGCAAGGATGTTGGGTATGTTAAGCAACAGATTGCGAAGAGGGAAAAAGAGTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAATGGGGAACTGCTTGAGGATCAGAAGCTTATAGATGATATCTGTTGCAAATATAATGATGCAGTGATACATCTTTTTGTTAGAACAAAGTACGCGGATGTTAGTACGGGACTTGACGAGTTGTCCATTGAAGCAAAAGAATTGAATGATGCTAATGAAAGTGACTATGGGAGAGAATATGATGTTAGTAAAGAAGATGCTGCAAGGGAGTATGAAGCTATCGAGCAGATTATGTCAAGGAAAGCTCTTGATAGAGGACTTCTTTTGGAGCCGGTCATTGTTAACCCTAAAGTTGAACTAACTTCAGAGGTTTGGGATATGATTAACTCCACATATGATGGGCTAGATAGTGGGAATTCTCCAATCAGATCGTCAGAGGGCACAGGCGGGGCTTACTTTATGCTAGATTCAACCGGGCAAAAATATATATCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTATGAATAACCCTAGAGGTTTACCTTTGTCATTAGACGGCGAAGGCTTAAAAAAGGGTACAAGAGTTGGCCAAGGAGCTTTCAGGGAAGTAGCTGCTTATATTTTGGATCATCCAATGAGTGGCCGCCGATCATTATTTGGCGACGGGAAGGGCTTTGCCGGTGTTCCGCCGACTGTTATGGCGAAGTCCTTGCATAAAGGGTATAACCATCCAGAGGGTTTGACAGTTAAGTTTGGTTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGTGAGGATATGGGACCTGGTGCTTTTCCGGTGAAGGAAGTGCATAAGATTACGGTGCTGGACATGAGACTTGCTAATGCAGATAGACATGCTGGGAATATTTTGCTTGGCAGAGAGAAGGAAAATGACCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCCTCCCTACCAGTTTTGAAGACTGTACCTTTGAATGGCTTTATTGGCCTCAGGCTCGCCAGCCGTACTCTCCTGAGATCATCGACTACATAGAGTCCCTGGACGCTGAAGAAGATATTGCCCTTCTGAAGTTTCACGGATGGGATCTGCCACTCGAGTGCGCCCGCACTCTCCGAATCTCGACCATGCTTCTGCAAAAAGGAGTGGAAAAAGGGATGACCCCTTTCGCCATAGGAAGCCTAATGTGCCGAAAATCCTTGAACAACGAGTCTGTGATTGAAGGAATTGTTAAAACAGCCCTTGATTCTGTTCTTCCTGGTACTAGTGAAGCTACTTTCATGGAAGCTGTTTCTGAAATTATAGACCGACACCTTGACGAAGTCACGAGCAATTATAATTCTTAA 1779 0.439 MSSAGISTLSPVSRETLLSPTNGFCNPLHSSVDHHEFIFVYLSYSGSLSPMRVLPSDTIESVKLKIQRNEGVTNKQKLVCNGRELSRSNSLLKDYGVTEGNVLHLVIRLTDLQTISVRTCSGKEFSFQVERCKDVGYVKQQIAKREKEFADPEQQEVVCNGELLEDQKLIDDICCKYNDAVIHLFVRTKYADVSTGLDELSIEAKELNDANESDYGREYDVSKEDAAREYEAIEQIMSRKALDRGLLLEPVIVNPKVELTSEVWDMINSTYDGLDSGNSPIRSSEGTGGAYFMLDSTGQKYISVFKPIDEEPMAMNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYILDHPMSGRRSLFGDGKGFAGVPPTVMAKSLHKGYNHPEGLTVKFGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILLGREKENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIESLDAEEDIALLKFHGWDLPLECARTLRISTMLLQKGVEKGMTPFAIGSLMCRKSLNNESVIEGIVKTALDSVLPGTSEATFMEAVSEIIDRHLDEVTSNYNS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01036 592 Gene3D - 35 112 - -
Vifa4g01036 592 Gene3D - 113 195 - -
Vifa4g01036 592 PRINTS Ubiquitin signature 89 110 IPR019956 -
Vifa4g01036 592 PRINTS Ubiquitin signature 47 67 IPR019956 -
Vifa4g01036 592 SUPERFAMILY Protein kinase-like (PK-like) 423 588 IPR011009 -
Vifa4g01036 592 Pfam Phosphatidylinositol 3- and 4-kinase 286 535 IPR000403 -
Vifa4g01036 592 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 277 570 IPR000403 -
Vifa4g01036 592 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Vifa4g01036 592 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 47 559 IPR044571 -
Vifa4g01036 592 SUPERFAMILY Ubiquitin-like 35 110 IPR029071 -
Vifa4g01036 592 Pfam Ubiquitin family 44 109 IPR000626 GO:0005515
Vifa4g01036 592 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Vifa4g01036 592 ProSiteProfiles Ubiquitin domain profile. 38 108 IPR000626 GO:0005515
Vifa4g01036 592 SMART ubq_7 113 187 IPR000626 GO:0005515
Vifa4g01036 592 SMART ubq_7 38 108 IPR000626 GO:0005515
Vifa4g01036 592 CDD Ubl_ubiquitin_like 115 185 - -
Vifa4g01036 592 SUPERFAMILY Ubiquitin-like 111 188 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01036 Vifa-Chr4 299220678 299222701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01036 1 589 Acyl Lipid Metabolism Gene Families AT5G24240 53.923 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01036 - - gmx:100815111 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01036 4 299220678 299222701 Vifa2g02717 2 748430564 748432377 ECH
Vifa4g01036 4 299220678 299222701 Vifa4g01036 4 299220678 299222701 ECH
Vifa1g00408 1 65298937 65300373 Vifa4g01036 4 299220678 299222701 ECH
Vifa5g04019 5 1278320437 1278322336 Vifa4g01036 4 299220678 299222701 PCT