Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02717 ATGGCTTGTTTGACACTTAGACCAATGTATGAAAATGGTGAATACACTAGTGGCTTTAGTACTCATATGAGGGATTCAATTTTGATTTACCTATCTGTTGGGAAGGAATTGGCTCATAACAAATCATGTGTCCGTGATTATGGAGTTGCTGATGGAAATGTGTTGCATCTAGTTCTAAGGCTTTCTGATCTTAAAGCTATTGCAATAAGGATTTTATCTGGTAAGGAGTATGGGTTTTATGTCGAGAAGACTAGGAATGTGGGTTATGTGAAGCAGCAGATTGCAAGGAAAGGGCAAGGGTTCTTCGATCTTGCAGATCAAGAATTGGTATGGAAGGGCGAGGCACTTGATGACCAGAGACTTATTGAGGACATCTGTGAGGATAATGATGCTGTGATTCATTTGTTGGTCAGGATATCAGATGCCAAGGTAAGAACTAAACCAGTAGAGAAGGATTTTGAATTATCGACCGAGGCATCGTCTGCACATGATATAGTGCCAAATTTAGCTGCAGACCAGTTAGGGCCACTGTATATAACAAATAAGGTCCTGAAGAAGAACTGGTTGACTAGTGAATTTCTTTTGGAACCAATTTTTAAGAATTCCAATATCAAAATTCCACCACTGATCCAGAAACTAGTTAAAATTACATTAGAGGGGTTAGAGAGAGGCCGTAAACCAATTCGATCATCAGAGGGATCAGGAGGAGCTTATCTCATGCAAGATCCATCTGGCTTAAAGTGTGTTTCAGTTTTCAAGCCTACTGACGAGGAGCCAATGGCAATTAATAATCCTCGGGGCTTATCTATCTGTGTTGATGGTGAAGGGTTAAAGAAAGGAACACGAGTAGGGAAAGGTGCATTGAGAGAAGTTGCAGCTTACATCTTGGATCATCCGAGGAAAGGATCTCGCTCGTATCATAACAATGAGGAGCCGGGGTTTGCTGGAGTTCCACCTACTGTTATGATCAAATGCATGCATGAAGGGTTCCATCATCTCGAAGGTTATAAGAAGGTTTCAAGTAATGTTAAAATAGGATCACTTCAAATGTTTATGAGGAATATTGGAAGCTGTGAAGATATGGGCCCAAGTGCATTTCCAGTGGAAGAGGTACACAAGATCTCTGTGCTGGATATCAGGTTGGCAAATGCAGATAGACATACTGGGAACATTTTGGTTGCCAAGGACGGTGAAGACGGTCCAACTGTCCTTACTCCAATTGGTCATGGCTATTGCCTACCTGAGAGTTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTCAACAACCTTACTCCCCAGACACCATTGAGTACATAAAATCTCTGGATGCAGAATATGATATCAAGCTTTTGAAGTCTCATGGATGGGAACTTCCTCCTGAATGTGTCCAGATCCTTCGTATATCAACCCTGCTTCTTCAAAAAGGTGCAGAGAAAGGACTCACTCCTTTCACCATTGGAAGCATTATGTGTAGAGAAACAATGAAGAAAAAGTCTGTCATTGAGCAGATTATTCAGAAAGCGGAACAAGCTGCACTTCCTGGAACAAACGAAGCTGCATTCCTTGATCTTGTTTCTGTGATCATGGATAATCATTTAGAAGGCCTATTCCCATGA 1626 0.4151 MACLTLRPMYENGEYTSGFSTHMRDSILIYLSVGKELAHNKSCVRDYGVADGNVLHLVLRLSDLKAIAIRILSGKEYGFYVEKTRNVGYVKQQIARKGQGFFDLADQELVWKGEALDDQRLIEDICEDNDAVIHLLVRISDAKVRTKPVEKDFELSTEASSAHDIVPNLAADQLGPLYITNKVLKKNWLTSEFLLEPIFKNSNIKIPPLIQKLVKITLEGLERGRKPIRSSEGSGGAYLMQDPSGLKCVSVFKPTDEEPMAINNPRGLSICVDGEGLKKGTRVGKGALREVAAYILDHPRKGSRSYHNNEEPGFAGVPPTVMIKCMHEGFHHLEGYKKVSSNVKIGSLQMFMRNIGSCEDMGPSAFPVEEVHKISVLDIRLANADRHTGNILVAKDGEDGPTVLTPIGHGYCLPESFEDCTFDWLYWPQAQQPYSPDTIEYIKSLDAEYDIKLLKSHGWELPPECVQILRISTLLLQKGAEKGLTPFTIGSIMCRETMKKKSVIEQIIQKAEQAALPGTNEAAFLDLVSVIMDNHLEGLFP 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02717 541 CDD Ubl_ubiquitin_like 67 136 - -
Vifa2g02717 541 SUPERFAMILY Ubiquitin-like 33 141 IPR029071 -
Vifa2g02717 541 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 224 523 IPR000403 -
Vifa2g02717 541 Pfam Phosphatidylinositol 3- and 4-kinase 233 489 IPR000403 -
Vifa2g02717 541 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 36 514 IPR044571 -
Vifa2g02717 541 ProSiteProfiles Ubiquitin domain profile. 65 142 IPR000626 GO:0005515
Vifa2g02717 541 Pfam Ubiquitin family 67 138 IPR000626 GO:0005515
Vifa2g02717 541 SUPERFAMILY Protein kinase-like (PK-like) 375 538 IPR011009 -
Vifa2g02717 541 Gene3D - 65 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02717 Vifa-Chr2 748430564 748432377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02717 34 537 Acyl Lipid Metabolism Gene Families AT5G24240 60.913 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02717 - - gmx:100812724 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01036 4 299220678 299222701 Vifa2g02717 2 748430564 748432377 ECH
Vifa2g02717 2 748430564 748432377 Vifa2g02717 2 748430564 748432377 ECH