Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00408 ATGTTATCTGGAACTAAACAACTGGTTAAGGATATTATGATGGCAATAAAAGATGGCGTCGAACCAATCCCTATTCAGAGTGGATTAGGAGGGGCATATTATTTTAGAAACATTTATGGTGAAAACATCGCAATTGTTAAACCAACTGATGAAGAACCTTATGCACCAAACAATCCGAAAGGTTTTGTCGGTAAAGCTCTCGGACAACCTGGATTGAAAAGGTCGGTGAGGGTTGGAGAGACGGGATTCAGAGAAGTTGCAGCTTACCTTCTTGACCATGATCATTTTGCGAATGTGCCTTCTACTGCACTTGTGAAGGTTACACACGGTATTTTTAATGTTAACGACATGGTCAATGGTAATATGCATCTTAACAAGAAGCAAATAAGCAAGATTGCATCACTCCAACATTACATTCCTCATGATTTTGATGCAAGTGATCATGGAACTTCTAGTTTTCCCGTTGCTTCTGTTCATAGGATCGGAATTTTAGATGTACGCATCTTAAATACAGACAGACATGCAGGAAATCTTCTCGTCAAGAAGCTTGATGAGCTTGGAAGGTTTGACCGGGTCGAGCTTTTTCCTATCGATCATGGTCTTTGTCTACCTGAAAATCTGGAAGATCCTTATTTTGAATGGATCCATTGGCCTCAAGCTTCAATCCCTTTCTCTGATGATGAGCTGAAGTACATATCTCGTCTAGACCCATTTCGTGATTCAGAAATGCTTAGAATGGAGCTTCCAATGATTCGAGAAGCATGCTTACGGGTTTTGGTTCTTTGTACTTTGTTCCTCAAAGAAGCAGCAGCCTTTGGTCTTTGTCTAGCTGAGATCGGCGATATGATGAGTAGAGAATTTAACTGTCATGTTGAAGAACCTAGTGAGCTTGAGCTAATATGTATTGAGGCAAAGAAGCTATTAGATCATGAAGATTTATCATCTTTTGAAAGAAAAGTAGGAGACAAAGATGCGACCCCTTTTCAGTTAGATTGCGAGGATCCGGATCCGGATTCTAATTTTGTGTTAAATCTAGAAGAGAAACCAACAGTGTCATCATCATCTCAATTCCGAATGAGAAATGGAAACGGTAGAATTAAACTTTCTAAACTAGAAGAGAGTGTAATGGAGGAGGAAGAAGGCGATATTTCAAAGCTATCTGTGTTAGTGAAAAACGCGGCTATCAATGAAAAAAGTTGTCAGTTCTCATGTGTGAAACAAAGAAGTGGCTCTTCGGTTGCGAGTTCTTCTGGAGATAACAGTGTGAATGATTTGGTGACAGGTTCAAGTTTTGTGAAGTTGACAGATATGGATGAAGAGAAGTGGAACCAGTTTCTTGAGAATTTTCAAAGTTTATTAATCCCAGCTTTTGTTAACTGTAAAGAAAAGAATATGAAGAGGCAGAGACAGAGACTTGGAACCTCGTGCAAAATTTAG 1437 0.3932 MLSGTKQLVKDIMMAIKDGVEPIPIQSGLGGAYYFRNIYGENIAIVKPTDEEPYAPNNPKGFVGKALGQPGLKRSVRVGETGFREVAAYLLDHDHFANVPSTALVKVTHGIFNVNDMVNGNMHLNKKQISKIASLQHYIPHDFDASDHGTSSFPVASVHRIGILDVRILNTDRHAGNLLVKKLDELGRFDRVELFPIDHGLCLPENLEDPYFEWIHWPQASIPFSDDELKYISRLDPFRDSEMLRMELPMIREACLRVLVLCTLFLKEAAAFGLCLAEIGDMMSREFNCHVEEPSELELICIEAKKLLDHEDLSSFERKVGDKDATPFQLDCEDPDPDSNFVLNLEEKPTVSSSSQFRMRNGNGRIKLSKLEESVMEEEEGDISKLSVLVKNAAINEKSCQFSCVKQRSGSSVASSSGDNSVNDLVTGSSFVKLTDMDEEKWNQFLENFQSLLIPAFVNCKEKNMKRQRQRLGTSCKI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00408 478 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 3 474 IPR044571 -
Vifa1g00408 478 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 19 316 IPR000403 -
Vifa1g00408 478 Pfam Phosphatidylinositol 3- and 4-kinase 31 279 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00408 Vifa-Chr1 65298937 65300373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00408 6 478 Acyl Lipid Metabolism Gene Families AT1G13640 61.066 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00408 - - tpra:123889077 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00408 1 65298937 65300373 Vifa1g00408 1 65298937 65300373 ECH
Vifa1g00408 1 65298937 65300373 Vifa4g01036 4 299220678 299222701 ECH