Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04019 ATGTCATCTGCTGGTGTTACTACTCTTAGTCCAGCGGATCCTACTGAATCATTGTTGTCTCCAAATGTGTCATCTCATTTTCCGTCGTCTTTGGAGGAAAACTCCATTTTCATATTTCTATCATTTTCGGGATCGTTGACGCCTATTCGTGTTATGGAGTGGGATACTATTGAGTCTGTGAAATTCAAAATTCAGAGGAGTGAGAGTCTTCCGTTTTTAACTAACAAACAGAAGTTGGTTTATGCTGGTCGCGAGCTTGCTCGGAGTGATACTTTGCTTAAGGACTATGGTGTTACCGATGGAAATGTTTTGCATTTGATAATCAAGCTTTCGGATCTTCAGCTTATCAATGTGAAAACATCTTCTGGGAAGGAGTTTACTTTTCAGGTTGAACGAGGTAGGGATGTCAAGTACATCAAGCGGAGGATTGCTAAAAAGGAGAAACAATTTGATGATCCTGAGGACCAGGAGCTTGTGTGTAATGGGGAGCGGCTTGAGGATCAGAAGATTATTGATGATATCTGCTGTAAGCATAATGATGCAGTGGTGCATCTGTTTGTTAGGAAGAAGCACGCAAAAGTTCATAGAAGGCCCCTTGAGTTGTCCATTGTAGCAACAGACTTGGCTCATAAGAAAACTAAAGTTGTTTGCGGAAATTCTAGTGATAGAAAATTTGATGTTGCTGGTGGAGAAGATAGTCTTTCCATTCAAGGAGTTGTGCCAAGAAAGCTTCCGGATAGAGATTTTCTTTTGGAGCCAATTATAATCAACCCTAAAATTGAGTTAGCTTCAGTGATGCAGAATATGGTAAACACTGCATACGATGGACTAGCTAGTGAAAGCCATCCAATAGGATCTGCAGAAGGTACCGGGGGAGCTTACTTTATGCTTGATTCAACTGGTCAGAAGTATGTGTCTGTTTTTAAACCTATTGATGAAGAGCCGATGGCTGTGAATAACCCTCGAGGTCTTCCATTATCATTAAATGGCGAAGGTTTGAAAAAGGGTACAAGAGTTGGCCAGGGAGCGTTCAGGGAAGTTGCGGCTTATGTTTTGGATCATCCAATAAGTGGACGCCGCAATTTATTTGGTGACGTGAAGGGTTTTGCTGGCGTACCTCCAACTTTGATGATGTTTGTGAAAAATAACGGGAGCTGCGAAGATATCGGTCCTGGGGCTTTCCCAGTAAATGAAGTACACAAAATTACTGTATTGGACATGAGATTGGCAAATGCAGATAGACATGCTGGGAATATTTTGGTCAGCATAGAGGAGCACAATGACCAGCCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTCGAAGATTGTACCTTCGAATGGCTTTACTGGCCCCAAGCCCGGAAACCATATTCCGCAGAAACTATTGAGTACATAAAGTCATTGGATGCTGAAGAAGATATTGCACTTTTGAAGTTTCATGGATGGGATCTGCCAATTGAATGTGCCCGTACTCTTAGAATCTCTACAATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACACCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCATTGAACAAAGAATCTGTGATAGAGGAAATAGTTGAAGAAGCACTGGATTCTGTTCTTCCGGGCACAAGTGAAACTACGTTGCTGGATGCTGTTTCTCAAATCATGGATCAGCGTCTTCATAATATTTTCAACTCTCCTTTTTAA 1719 0.4165 MSSAGVTTLSPADPTESLLSPNVSSHFPSSLEENSIFIFLSFSGSLTPIRVMEWDTIESVKFKIQRSESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFTFQVERGRDVKYIKRRIAKKEKQFDDPEDQELVCNGERLEDQKIIDDICCKHNDAVVHLFVRKKHAKVHRRPLELSIVATDLAHKKTKVVCGNSSDRKFDVAGGEDSLSIQGVVPRKLPDRDFLLEPIIINPKIELASVMQNMVNTAYDGLASESHPIGSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLNGEGLKKGTRVGQGAFREVAAYVLDHPISGRRNLFGDVKGFAGVPPTLMMFVKNNGSCEDIGPGAFPVNEVHKITVLDMRLANADRHAGNILVSIEEHNDQPVLIPIDHGYCLPTSFEDCTFEWLYWPQARKPYSAETIEYIKSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEALDSVLPGTSETTLLDAVSQIMDQRLHNIFNSPF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04019 572 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 376 542 IPR044571 -
Vifa5g04019 572 ProSiteProfiles Ubiquitin domain profile. 55 109 IPR000626 GO:0005515
Vifa5g04019 572 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 280 551 IPR000403 -
Vifa5g04019 572 SMART ubq_7 114 188 IPR000626 GO:0005515
Vifa5g04019 572 SMART ubq_7 36 109 IPR000626 GO:0005515
Vifa5g04019 572 Pfam Phosphatidylinositol 3- and 4-kinase 289 516 IPR000403 -
Vifa5g04019 572 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Vifa5g04019 572 SUPERFAMILY Protein kinase-like (PK-like) 405 568 IPR011009 -
Vifa5g04019 572 Gene3D - 115 201 - -
Vifa5g04019 572 Gene3D - 24 114 - -
Vifa5g04019 572 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Vifa5g04019 572 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Vifa5g04019 572 CDD Ubl_ubiquitin_like 116 186 - -
Vifa5g04019 572 SUPERFAMILY Ubiquitin-like 28 110 IPR029071 -
Vifa5g04019 572 SUPERFAMILY Ubiquitin-like 108 191 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04019 Vifa-Chr5 1278320437 1278322336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04019 1 564 Acyl Lipid Metabolism Gene Families AT5G24240 50.842 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04019 - - gmx:100791631 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g04019 5 1278320437 1278322336 Vifa4g01036 4 299220678 299222701 PCT