Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00513 ATGCAGCCAAGGATTTCGATAAAGAGAAGACCAGGAGGTAATGGTAATAATCAAGTTACAATGCAATCAATGAACCCTCAAGTTCAAAGCCTCCATCATCCTAGTAGTCATCATGAAGAGGACTACAATCTAAGGGACACGAGTCCACAGCTCGGTGAACGATGGCCTAATGGTGGAAGAGGATGGATGAGTGGTGGCGAAAGATCGACAAGCACATATGACTTAGTTGAGCAGATGTTTTATTTGTATGTTCGCGTTGTGAAAGCGAAGAATCTCTCCACGAATAGTCTCACCTCGAGCTGTGATCCTTATGTTGAAGTGAGGCTAGGGAACTACAAAGGAAGAACGAAGCATATCGAGAAGAAATCAAATCCGGAGTGGAATCAAGTCTATGCTTTTTCCAAAGATCAAATTCAATCTTCGGTTTTGGAAGTTATTGTGAAGGATAAAGAAACGGTTGGTAGAGATGATTACATTGGAAGAGTAGCTTTCGACCTCAACGAAGTTCCAACTAGAGTTCCACCGGATAGTCCATTGGCTCCTCAATGGTATAGGCTTGATGACAGAAGAGGAGACGGAAAGGTTCGAGGCGATATCATGCTCGCGGTTTGGAATGGAACACAGGCTGATGAAGCTTTCTCAGATGCTTGGCATTCTGATGCTGCAACTGTGTATGGAGAAGGTGTTTTCAATATCAGATCAAAGGTTTACGTGTCTCCCAAACTATGGTATCTAAGGGTTAATGTGATTGAAGCACAAGACGTCATATCGAGCGATAGAAACCGCAGGCCGGAGGTTTTTATCAAAGCTCAGATGGGAAGCCAAGTTCTAGGGACTAAGGTATGTCCAACTACTACACCAATTTGGAATGAAGATTTGGTTTTTGTGGCGGCCGAGCCATTTGAGGAGCAATTGACAATTACCATGGAGGATCGCGTGCACGGTTCAAAAGATGAGGTACTTGGAAAGATAATCTTGCCATTGACACTCTTCGAGAAGCGGCTAGACCATAGGCCGGTTCAATCTCGATGGTTCAATCTCGAGAAATATGGTTTTGGAATGATGGAAGGTGATAGAAGAAATGAGGTTAAATTTTCGAGTAAGATTCATATGAGAATTTGCCTTGAAGGTGGATACCATGTCTTAGACGAATCGACTTTGTATGCAAGTGATCATAGACCAACTGCAAGGCAACTATGGAAGCAACCTATTGGTATGCTTGAAGTAGGGATCTTAGGAGCACAAAAGCTTCTTCCAATGAAGATGAACAATAGCCGCGGAAGCACGGACGCGTATTGTGTAGCCAAGTATGGTCAGAAATGGATCAGAACTAGAACGATTCTCGACACGTTTGGTCCGAAATGGAATGAACAATACACATGGGAGGTTTATGATCCTTGCACTGTGATAACACTTGGAGTTTTTGATAACTGTCATCTAGGTGGTGCAGGAGAAAAAGAGAAAGAAAAAGCTCCTAGAGATTCAAGAATTGGAAAGGTAAGGATTAGGCTCTCAACATTAGAAGCTAATAGGATTTACACAAACTCTTATCCACTTCTTGTTTTGCATCAACATGGTGTCAAAAAAATGGGTGAGCTTCAACTAGCAATAAGGTTCACTACTCTCTCATTAGCCAACTTGGTTTATATTTATGGACAACCTTTGCTTCCAAAGATGCATTACTTAAGTCCTTTAACTGTTAACCAAGTTGAAAACTTACGGTACCAAGCGATGAATATCGTTGCTACGAGGCTTGGTCGAGCCGAACCTCCTCTTAGGAAGGAGGTAGTTGAGTACATGTTGGATGTTGATTCTCATATGTGGAGCATGAGAAGAAGCAAAGCGAACTTTTTTCGCATCATGTCGCTTTTCTCTAGTGTGATCACTACGGGAAAATGGTTCAACCAAGTTTGCAATTGGAAGAATCCGGTCACATCGGTTCTAGTTCATGTTCTGTTTTTTATACTGATTCTGTATCCAGAATTGATTCTTCCAACAATTTTTCTCTACATGTTCTTGATTGGTTTATGGAACTATCGGTTTCGTCCAAGAAATCCAACTCATATGGATACTAAACTCTCATGGGCCGAAGGTGCAAACATCGACGAACTTGATGAAGAGTTCGACACATTTCCAACTTCTAAACCTCATGATGTGGTGAGAATGAGGTATGATAGGCTTCGAAGTGTTGCGGGAAGGATTCAAACTGTTGTCGGAGACATAGCTACACAAGGAGAGAGGTTTCATTCTCTACTGAGTTGGAGAGATACAAGAGCAACTAGTCTCTTTATAGTGTTCAGCTTATGTTCCGCGGTGATTCTCTATGCAACGCCACCGAGAGTGGTGGCTCTGGCTGCTGGTTTGTACTTTTTGCGACATCCAAAGTTTCGGAGCAAGATGCCTTCTGTTCCAAGCAATTTCTTCAAGAGGCTACCTGCTCAAACTGATAGCATGCTGTGA 2460 0.4244 MQPRISIKRRPGGNGNNQVTMQSMNPQVQSLHHPSSHHEEDYNLRDTSPQLGERWPNGGRGWMSGGERSTSTYDLVEQMFYLYVRVVKAKNLSTNSLTSSCDPYVEVRLGNYKGRTKHIEKKSNPEWNQVYAFSKDQIQSSVLEVIVKDKETVGRDDYIGRVAFDLNEVPTRVPPDSPLAPQWYRLDDRRGDGKVRGDIMLAVWNGTQADEAFSDAWHSDAATVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVISSDRNRRPEVFIKAQMGSQVLGTKVCPTTTPIWNEDLVFVAAEPFEEQLTITMEDRVHGSKDEVLGKIILPLTLFEKRLDHRPVQSRWFNLEKYGFGMMEGDRRNEVKFSSKIHMRICLEGGYHVLDESTLYASDHRPTARQLWKQPIGMLEVGILGAQKLLPMKMNNSRGSTDAYCVAKYGQKWIRTRTILDTFGPKWNEQYTWEVYDPCTVITLGVFDNCHLGGAGEKEKEKAPRDSRIGKVRIRLSTLEANRIYTNSYPLLVLHQHGVKKMGELQLAIRFTTLSLANLVYIYGQPLLPKMHYLSPLTVNQVENLRYQAMNIVATRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSSVITTGKWFNQVCNWKNPVTSVLVHVLFFILILYPELILPTIFLYMFLIGLWNYRFRPRNPTHMDTKLSWAEGANIDELDEEFDTFPTSKPHDVVRMRYDRLRSVAGRIQTVVGDIATQGERFHSLLSWRDTRATSLFIVFSLCSAVILYATPPRVVALAAGLYFLRHPKFRSKMPSVPSNFFKRLPAQTDSML 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00513 819 ProSiteProfiles C2 domain profile. 388 517 IPR000008 -
Vifa2g00513 819 ProSiteProfiles C2 domain profile. 63 184 IPR000008 -
Vifa2g00513 819 MobiDBLite consensus disorder prediction 33 47 - -
Vifa2g00513 819 SMART C2_3c 81 178 IPR000008 -
Vifa2g00513 819 SMART C2_3c 244 342 IPR000008 -
Vifa2g00513 819 SMART C2_3c 406 516 IPR000008 -
Vifa2g00513 819 Pfam C2 domain 81 184 IPR000008 -
Vifa2g00513 819 Pfam C2 domain 406 519 IPR000008 -
Vifa2g00513 819 Pfam C2 domain 243 347 IPR000008 -
Vifa2g00513 819 FunFam C2 domain-containing protein 230 375 - -
Vifa2g00513 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 405 541 IPR035892 -
Vifa2g00513 819 CDD C2B_MCTP_PRT_plant 81 207 IPR047257 -
Vifa2g00513 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 243 396 IPR035892 -
Vifa2g00513 819 CDD C2C_MCTP_PRT_plant 244 394 IPR047258 -
Vifa2g00513 819 Gene3D C2 domain 77 222 IPR035892 -
Vifa2g00513 819 MobiDBLite consensus disorder prediction 1 63 - -
Vifa2g00513 819 ProSiteProfiles C2 domain profile. 224 345 IPR000008 -
Vifa2g00513 819 MobiDBLite consensus disorder prediction 11 32 - -
Vifa2g00513 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 81 220 IPR035892 -
Vifa2g00513 819 Pfam Plant phosphoribosyltransferase C-terminal 664 819 IPR013583 -
Vifa2g00513 819 FunFam C2 domain-containing protein 76 222 - -
Vifa2g00513 819 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 27 819 IPR047259 -
Vifa2g00513 819 Gene3D C2 domain 231 375 IPR035892 -
Vifa2g00513 819 Gene3D C2 domain 388 543 IPR035892 -
Vifa2g00513 819 FunFam C2 domain-containing protein 388 543 - -
Vifa2g00513 819 CDD C2D_MCTP_PRT_plant 407 536 IPR047255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00513 Vifa-Chr2 94502598 94505206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00513 39 819 Lipid Metabolism Gene Families AT5G06850 72.935 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00513 - - lang:109333614 1419.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02432 5 804152459 804154789 Vifa2g00513 2 94502598 94505206 ECH
Vifa3g00559 3 101935679 101938072 Vifa2g00513 2 94502598 94505206 ECH
Vifa3g00005 3 469354 472244 Vifa2g00513 2 94502598 94505206 ECH
Vifa2g00513 2 94502598 94505206 Vifa2g00513 2 94502598 94505206 ECH