Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00005 ATGAGTTCTTCTGTCATGAGAAAGCTTGATGTAGTTTCTCCGGTTCCCGCCGATATTGACATTGCCAACTCCGTTCAACCTGTTCACATCGATGAAATTGCCAAGAGTCTGAACCTTACTCCCAATCATTACGATCTTTACGGAAAATATAAGGCCAAGGTTTTGTTGTCGGAATCGAAAAATGGATATTATGTTGTGGTTGGAGGTATTACTCCCACTCCTCTTGGTGAAGGCAAATCTACCACTACTGTTGGTCTTTGTCAAGCTTTAGGTGCTTTTCTCGATAAAAAGGTGGTCACCTGTGTTCGTCAACCATCACAAGGTCCTACTTTTGGAATCAAAGGAGGTGCAGCTGGTGGTGGTTATAGCCAAGTGATTCCCATGGATGAATTCAATCTTCATCTAACAGGAGATATCCATGCAATAACTGCAGCTAACAATCTTCTAGCTGCTGCAATTGATGCCCGGATTTTCCATGAATCAACACAATCAGATAAAGCTCTTTTCAACCGGTTATGCCCTGCAAATAAAGAAGGAAAAAGGAGTTTTAATGATGTCATGTTTAGGCGTCTCAACAAGCTGGCCATTTCAAAGACTAATCCAGATGATCTTACACCAGAAGAAGTAACTAAATTTGCTAGACTTGATATTGACCCTGATTCTATTACATGGAGGAGAGTAATGGACATCAATGACCGCTTCTTAAGGAAAATTTCTGTTGGTCAGGGACCTGATGAGAAAGGAATGGTAAGAGAAACAGCATTTGATATTTCTGTTGCTAGTGAGATAATGGCTGTTTTGGCATTGACAACTTCCCTAGCTGATATGCGCGAGAGGCTAGGGAAAATGGTTATTGGAAATAGCAAGAGTGGTGACCCTGTAACTGCTGATGATCTAGGTGTTGGAGGTCCATTTGCAAATATTGCTCATGGAAATTCTTCTATTGTGGCTGATAAAATTGCACTAAAGTTGGTTGGACCAGGTGGATTTGTAGTTACTGAAGCTGGTTTTGGGTCTGATATTGGAACTGAAAAGTTCATGAACATTAAGTGTCGATATAGTGTTGCCATCAACAAGTTTTCAACCGACACTGAAGCTGAGCTAAATGCGGTTAGAAAAGCTGCCTTAGATGCCGGAGCTTTTGATGCTGTAGTATGTAGCCATCATGCCCATGGTGGCAAAGGAGCAGTGGACCTGGGCATTGCAGTTCAAAAAGCTTGTGAGAATGCGACACAGCCATTGAAGTTCTTATATCCTTTGGATATAGGTATAAAAGAGAAGATAGAAGCAATAGCCAAGTCATATGGAGCCAGTGGCGTTGAGTACTCAGAGCAGGCCGAGAAGAAGATTGAGATGTATACCAAGCAAGGATTTTCAGGGCTTCCAATCTGTATGGCTAAGACTCAGTATTCATTCTCAGACAATGCAGCAGCTAAGGGAGCTCCAACTGGTTTTGTCTTACCAATAAGAGATGTAAGAGCTAGTATTGGAGCTGGATTTATTTATCCTTTAGTTGGAACAATGAGTACCATGCCTGGCTTGCCAACAAGACCATGCTTCTATGACATTGATATCGACACAACAACCGGAAAAGTCGTTGGTCTCTCTTAA 1611 0.4184 MSSSVMRKLDVVSPVPADIDIANSVQPVHIDEIAKSLNLTPNHYDLYGKYKAKVLLSESKNGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCVRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDARIFHESTQSDKALFNRLCPANKEGKRSFNDVMFRRLNKLAISKTNPDDLTPEEVTKFARLDIDPDSITWRRVMDINDRFLRKISVGQGPDEKGMVRETAFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKSGDPVTADDLGVGGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGSDIGTEKFMNIKCRYSVAINKFSTDTEAELNAVRKAALDAGAFDAVVCSHHAHGGKGAVDLGIAVQKACENATQPLKFLYPLDIGIKEKIEAIAKSYGASGVEYSEQAEKKIEMYTKQGFSGLPICMAKTQYSFSDNAAAKGAPTGFVLPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDIDTTTGKVVGLS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00005 536 FunFam C-1-tetrahydrofolate synthase, cytoplasmic 16 168 - -
Vifa3g00005 536 FunFam Putative formate--tetrahydrofolate ligase 423 511 - -
Vifa3g00005 536 Gene3D - 160 225 - -
Vifa3g00005 536 FunFam Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 160 225 - -
Vifa3g00005 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 533 IPR027417 -
Vifa3g00005 536 Gene3D - 14 159 IPR027417 -
Vifa3g00005 536 Pfam Formate--tetrahydrofolate ligase 355 536 IPR000559 GO:0004329|GO:0005524
Vifa3g00005 536 Pfam Formate--tetrahydrofolate ligase 17 303 IPR000559 GO:0004329|GO:0005524
Vifa3g00005 536 ProSitePatterns Formate--tetrahydrofolate ligase signature 1. 112 122 IPR020628 GO:0005524
Vifa3g00005 536 Gene3D - 355 422 IPR027417 -
Vifa3g00005 536 Gene3D - 297 354 IPR027417 -
Vifa3g00005 536 Gene3D Formyltetrahydrofolate synthetase, domain 3 423 511 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00005 K01938 - zju:107415101 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00005 3 469354 472244 Vifa3g00005 3 469354 472244 ECH
Vifa3g00005 3 469354 472244 Vifa2g00513 2 94502598 94505206 ECH