Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00559 ATGAGTTCATCTAAAACTGCTCCAAAACCAAACACAGATGATTACAAGCTAAAAGACACAAAGCCAGAGCTAGGAGAGAAATGGCCACACGGAGGACAACGCGGCGGTACGGGGTGGATTTACAGCGAAAGAGCAACAAGCACATACGATCTTGTCGAACAAATGTACTACCTCTACGTTCGCGTGGTAAAAGCCAAAGACTTGCCACCGAATCCAGTCACAGGAAACGTAGATCCTTACGTTGAAGTAAAAGTTGGTAACTACAAAGGAAAAACAAGGCACTTCGAGAAGAAAATGAATCCGGAATGGAAACAAGTATTCGCGTTCTCGAAAGAAAAGATACAATCTTCGGTCGTTGAAGTTTTCGTAAGAGACAAAGAGATGGTAGCTCGAGATGATTACATCGGAAAAGTTGTGTTTGATATGCATGAAGTTCCAACAAGAGTTCCACCAGATAGTCCTTTAGCACCGCAATGGTATAGACTCGAGAATTTGAGAGGCGAAACTCGAACAAGAGGTGAAGTTATGCTAGCTGTTTGGATGGGAACACAAGCAGATGAAGCTTTTCCTGAGGCATGGCATTCAGATTCAGCTTCGGTAAAAGGCGAAGGTGTTTACAATATTAGATCAAAGGTTTATGTAAACCCTAAACTTTGGTATGTAAGGGTTAATGTCATTGAAGCTCAAGATGTTGAGCCACATGATAAAACTCAACCACCACAAGTTTTTGTTAAGGCTCAAGTTGGACAGCAAGTACTTAAAACCAAGCTTTGTCCGACGAAAACTCCGAATCCTACATGGAATGAAGATCTTGTATTTGTAGCGGCCGAGCCGTTTGAAGAACAGCTCGTGTTGACAGTCGAAAACAAGGCGAGTCCTGGTAAAGACGAAGTGGTGGCGAAGTTAACGTTGGCGTTGAACAAATTCGAGACACGGATGGATCATCGGCCGGTGCACTCGCGGTGGTACAACGTGGAGAGATTCGGATTCGGCGTTCTTGAAGGAGATAAAGGGAATGAGCTTAAATTCTCAAGTAGGATTCACCTTAGGGTTTGTCTTGAAGGTGCTTATCATGTTCTTGATGAATCAACAATGTATATTAGTGATACAAGAACAACTGCTAGACAACTATGGAAGCAGCCTATTGGGATTCTTGAAGTTGGAATATTGAGTGCTCAAGGGCTTACACCAATGAAAACAAGCAATGGTAAAAGCTCAACAGATGCTTATTGTGTCGCAAAATACGGTATGAAATGGGTTAGAACAAGAACAATCACTGAGAGTTTTAATCCGAAATGGAATGAACAATACACATGGGAAGTTCACGATCCTTGCACGGTTATAACTTTCGGCGTTTTCGATAACTGTCATTTAGGTGGTGGAAATTCTCAACAGGGTGCCGTGAAAACAAATGATGCAAGAATAGGTAAAGTTCGAATCCGTTTATCAACTTTAGAAATGGATAGAATCTACACAAACTCGTATCCGTTGCTCGTTCTACGTCCCAGCGGATTGAAGAAAATGGGAGAACTTCAACTAGCTATTCGTTTCACATGTCTTTCGTTATCGCATATAATTTACCTTTACGGACACCCTTTACTACCGAAAATGCATTACTTGCACCCATTCACAGTGAATCAGTTGGATAGTTTAAGGTACCAAGCAATGAGTATTGTAGCAGTGAGGCTAGGAAGAGCAGAACCACCTTTGAGGAAAGAAGTTGTTGAGTACATGCTTGATGTGGACTCACATATATGGAGTTTAAGAAGAAGCAAAGCCAATTTCTTCCGAATCGTTTCTCTTTTTTCGGGCCTAATATCCATGAGTAAATGGCTCGGTGAAGTTCAAAAGTGGAAGAATCCGGTGACATCGATTTTGGTTCATGTTCTATTTTTCATCTTGATATGTTATCCGGAATTGATTCTACCCACGATTTTCCTCTACATGTTTCTCATTGGAATATGGAACTTTCGGAAAAGATCACGACATCCTCCGCATATGGACACGAAAATTTCATGGGCCGAAGCAGCGCATCCGGATGAGCTAGATGAAGAGTTTGATACTTTTCCGACTTCTAAGGCACAAGATGTGATCAGAATGAGATATGATAGGCTAAGGAGTGTGGCTGGGAGAATTCAAACTGTGGTTGGTGATATTGCAACTCAAGGTGAGAGGCTTCAAGCTTTGCTTAGTTGGAGAGATCCAAGAGCAACTTTTTTGTTTGTGATTTTCTGTCTTGTTACTGCTGTTGCATTGTATGTTACACCTTTTAAGATGGTGATTTCTGTTGCTGGGATTTTCTGGCTTAGGCATCCGAAGTTTAGGAGCAAGTTGCCTTCTGTGCCAAGTAATTTCTTCAAGAGGTTGCCATCTGGTGCTGATAGCATGCTTTGA 2394 0.4181 MSSSKTAPKPNTDDYKLKDTKPELGEKWPHGGQRGGTGWIYSERATSTYDLVEQMYYLYVRVVKAKDLPPNPVTGNVDPYVEVKVGNYKGKTRHFEKKMNPEWKQVFAFSKEKIQSSVVEVFVRDKEMVARDDYIGKVVFDMHEVPTRVPPDSPLAPQWYRLENLRGETRTRGEVMLAVWMGTQADEAFPEAWHSDSASVKGEGVYNIRSKVYVNPKLWYVRVNVIEAQDVEPHDKTQPPQVFVKAQVGQQVLKTKLCPTKTPNPTWNEDLVFVAAEPFEEQLVLTVENKASPGKDEVVAKLTLALNKFETRMDHRPVHSRWYNVERFGFGVLEGDKGNELKFSSRIHLRVCLEGAYHVLDESTMYISDTRTTARQLWKQPIGILEVGILSAQGLTPMKTSNGKSSTDAYCVAKYGMKWVRTRTITESFNPKWNEQYTWEVHDPCTVITFGVFDNCHLGGGNSQQGAVKTNDARIGKVRIRLSTLEMDRIYTNSYPLLVLRPSGLKKMGELQLAIRFTCLSLSHIIYLYGHPLLPKMHYLHPFTVNQLDSLRYQAMSIVAVRLGRAEPPLRKEVVEYMLDVDSHIWSLRRSKANFFRIVSLFSGLISMSKWLGEVQKWKNPVTSILVHVLFFILICYPELILPTIFLYMFLIGIWNFRKRSRHPPHMDTKISWAEAAHPDELDEEFDTFPTSKAQDVIRMRYDRLRSVAGRIQTVVGDIATQGERLQALLSWRDPRATFLFVIFCLVTAVALYVTPFKMVISVAGIFWLRHPKFRSKLPSVPSNFFKRLPSGADSML 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00559 797 ProSiteProfiles C2 domain profile. 200 323 IPR000008 -
Vifa3g00559 797 Pfam C2 domain 57 160 IPR000008 -
Vifa3g00559 797 Pfam C2 domain 219 324 IPR000008 -
Vifa3g00559 797 Pfam C2 domain 383 497 IPR000008 -
Vifa3g00559 797 FunFam C2 domain-containing protein 52 198 - -
Vifa3g00559 797 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 10 797 IPR047259 -
Vifa3g00559 797 MobiDBLite consensus disorder prediction 11 28 - -
Vifa3g00559 797 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 383 519 IPR035892 -
Vifa3g00559 797 ProSiteProfiles C2 domain profile. 39 160 IPR000008 -
Vifa3g00559 797 CDD C2C_MCTP_PRT_plant 220 371 IPR047258 -
Vifa3g00559 797 ProSiteProfiles C2 domain profile. 366 495 IPR000008 -
Vifa3g00559 797 CDD C2B_MCTP_PRT_plant 57 183 IPR047257 -
Vifa3g00559 797 SMART C2_3c 220 318 IPR000008 -
Vifa3g00559 797 SMART C2_3c 57 154 IPR000008 -
Vifa3g00559 797 SMART C2_3c 384 494 IPR000008 -
Vifa3g00559 797 Pfam Plant phosphoribosyltransferase C-terminal 642 797 IPR013583 -
Vifa3g00559 797 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g00559 797 FunFam C2 domain-containing protein 206 353 - -
Vifa3g00559 797 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 219 373 IPR035892 -
Vifa3g00559 797 CDD C2D_MCTP_PRT_plant 384 514 IPR047255 -
Vifa3g00559 797 Gene3D C2 domain 206 353 IPR035892 -
Vifa3g00559 797 Gene3D C2 domain 363 520 IPR035892 -
Vifa3g00559 797 Gene3D C2 domain 40 181 IPR035892 -
Vifa3g00559 797 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 56 197 IPR035892 -
Vifa3g00559 797 FunFam C2 domain-containing protein 366 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00559 Vifa-Chr3 101935679 101938072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00559 11 797 Lipid Metabolism Gene Families AT5G06850 80.559 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00559 - - gmx:100814611 1488.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00559 3 101935679 101938072 Vifa2g00513 2 94502598 94505206 ECH
Vifa3g00559 3 101935679 101938072 Vifa3g00559 3 101935679 101938072 ECH
Vifa5g02432 5 804152459 804154789 Vifa3g00559 3 101935679 101938072 PCT