Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00533 ATGTCGTCTGCTGGTGTCACCATCCTTAGCCCTGTTCCAAGGGAACTGTTACTGTCTTCAAATGGATACCATACTCCACTGCACTTGTCATTGGATCATGAGTTTATTTTCATATTTCTCTCCCATTCTGGATCCTTGACTCCGATGCGTGTCCTTCCATACGATACCATTGAGTCGTTGAAACTCAAAATCAAAAAGGTCGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGACGAGAGCTAGCGCGGAGCAATTCCCTGCTGAAGGACTATGGGGTTACGGAAGGAAATGTTTTGCATTTGGTGATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACCTCTTCCGGGAAAGACTTTACCTTTCAGGTGGAGAAATGCAGGGATGTTGGGTATGTGAAGCAGCAGATTGCAAAAAAGGAGAAGCGCTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGAGGGTTATTGATGATATCTGTAGTAAATATAAGGATGCAGTGATTCATCTGTTTGTTAGGGTGAAATATGCTGAAGTTAGGACAGGACAAGATGAGTTGTCGGTCAAGGCAAAGGAGTTGAATGGTACAAAAGATTACGATGCTAGTGAAAATAATTGTAGTAGAGAACGTGATGTTAGTAAAGAAGATGAGGGAAGGGAGGATGGAACCACCGAGCCAATTGTGGCAAGGAAGGCTCTTGATAGAGATCTTTTGGAGCCTGTCATTGTTAATAAGAAAATTGAATTGGCTTCAGAGGTTTGGAATATGATTAACATGACATACGAAGGACTAAACAGTGGAAATTATCCAATCAGATCAGCAGAGGGTACAGGGGGAGCTTACTTTATGCTTGATTCAACTGGGCAAAAGTATGTATCTGTTTTTAAGCCCATTGATGAAGAACCAATGGCTGTGAATAACCCTAGAGGTTTGCCTTTCTCAGTAGATGGTGAAGGCTTAAAGAAGGGTACTAGAGTTGGTCAGGGAGCGTTCAGGGAAGTTGCAGCTTATATTTTGGACCATCCAATGAGGGGTCATCGATCAATATTTGGTGATCAGAAGGGCTTTGCTGGGGTTCCTCCAACTGTTATGGTTAAGTGCTTGCATGAAGGATTTAACCATCCTGGGGAGTTGACTGCTAAGCTTGGCTCCTTGCAAATGTTCGTGGAGAATAATGGAAGCTGCGAGGATATGGGTCCCGGGGCTTTTCCAGTGAAGGAAGTGCATAAAATTACTGTTCTGGACATGAGGCTCGCAAATGCAGATAGGCATGCCGGGAATATTTTGATCGGCAAAGAGGAGGAAAATGGCCAGGCTGTGTTGATTCCAATTGATCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCCCAAGCACGCCAACGATACTCTCCTGAGATCATTGACTATATAAGGTCACTGAATGCCGATGAAGATATTGCCCTTTTGAAGTTTCATGGATGGACTCTGCCAGTTGAATGTGCACGCACCCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGAGGAATGACCCCTTTTGGCATTGGAAGCCTTATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGAAACATTTCTTGATGCTGTTTCTGAAATCATGGACCAGCACCTTGATCAGATTCTGTCATAG 1782 0.4428 MSSAGVTILSPVPRELLLSSNGYHTPLHLSLDHEFIFIFLSHSGSLTPMRVLPYDTIESLKLKIKKVEGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVEKCRDVGYVKQQIAKKEKRFADPEQQEVVCNGELLEDQRVIDDICSKYKDAVIHLFVRVKYAEVRTGQDELSVKAKELNGTKDYDASENNCSRERDVSKEDEGREDGTTEPIVARKALDRDLLEPVIVNKKIELASEVWNMINMTYEGLNSGNYPIRSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPFSVDGEGLKKGTRVGQGAFREVAAYILDHPMRGHRSIFGDQKGFAGVPPTVMVKCLHEGFNHPGELTAKLGSLQMFVENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGKEEENGQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQRYSPEIIDYIRSLNADEDIALLKFHGWTLPVECARTLQISTMLLKKGVERGMTPFGIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEETFLDAVSEIMDQHLDQILS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00533 593 Pfam Phosphatidylinositol 3- and 4-kinase 291 539 IPR000403 -
Vian9g00533 593 SMART ubq_7 36 109 IPR000626 GO:0005515
Vian9g00533 593 SMART ubq_7 114 188 IPR000626 GO:0005515
Vian9g00533 593 MobiDBLite consensus disorder prediction 213 241 - -
Vian9g00533 593 SUPERFAMILY Ubiquitin-like 19 110 IPR029071 -
Vian9g00533 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
Vian9g00533 593 SUPERFAMILY Ubiquitin-like 108 189 IPR029071 -
Vian9g00533 593 Gene3D - 34 112 - -
Vian9g00533 593 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Vian9g00533 593 Pfam Ubiquitin family 39 110 IPR000626 GO:0005515
Vian9g00533 593 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Vian9g00533 593 SUPERFAMILY Protein kinase-like (PK-like) 429 591 IPR011009 -
Vian9g00533 593 Gene3D - 113 193 - -
Vian9g00533 593 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Vian9g00533 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 45 566 IPR044571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00533 Vian-Chr9 5920528 5923125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00533 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 54.181 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00533 - - gmx:100815111 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00533 9 5920528 5923125 Vian4g01375 4 27846670 27849333 ECH
Vian9g00533 9 5920528 5923125 Vian9g00533 9 5920528 5923125 ECH
Vian10g01474 10 25031497 25033425 Vian9g00533 9 5920528 5923125 ECH
Vian6g01060 6 27931057 27932987 Vian9g00533 9 5920528 5923125 PCT