Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01060 ATGTCTTCAGCCGGTGTCAGTACTCTTAGCGTGGTTCCCCCTGAGCCATTGTTGTCACCAAAGGCGTTCCCTTTCCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATATCTCTCCTTTTCGGGTTCGTTGACTCCAATCCGTGTTATGGAGTGGGATACCATTAGGTCTGTGAAATTCAAAATCCAAAGGTGTGAAAGCCTTCCGTTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAACTCGCGCGGAGTGATTCTCTGCTCAAGGACTATGGAGTGACTGATGGAAATGTCTTGCATTTGATAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACGTCGTCAGGGAAGGAGTTCTCGTTTCAGGTTGAAAGAGGTCGAGATGTTAAATTCATAAAGCGGCGAATTGCCAAAAGAGAGAAACAGTTTGATGATCCTGAGGAACAGGAGCTTGTGTGCAATGGGGAAAGGCTTGATGACCAGAGGCTTATTGATGATATCTGCTGCAAGCATAATGATGCTGTGCTACATCTGTTCGTGAGAAAAAAGAATGTTAAAATTCAGAGGAGACCCCTTGAGTTGTCCATCTTAGCAACAGATTTGACTGATGAGAAAAAGAACGATGTCAATGGAAAAACATGCAGGAGGAATTATGATGTTGGTAAAGAAGATACTAGTAGAAAGTCTGATGCCATTCAAAGAACTGTGCCGAGAAAGCCTCCCGACAGAGATATTTTTTTGGAGCCAGTTATTATTAACCCTAAAATTGAATTAGCTTCATCTATTAGGAATATGGTGAATTCTACATATGATGGACTTGACAGTGGAAAATATCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCTGTGGGGCAAAGGTATGTGTCTGTTTTTAAGCCTATTGACGAAGAACCAATGGCCGTGAATAACCCTCGAGGTCTTCCATTGTCATTAGATGGTGAAGGCTTAAAAAAGGGTACAAGGGTTGGTCAAGGTGCATTCAGGGAAGTTGCAGCCTATGTTCTAGATCATCCATTGAGTGGGCGCCGCAAATTATTTGGTGATGAGACGGGCTTTGCAGGTGTCCCTCCAACATTGATGATCAAGTGCTTGCATAAAGCATTTAACTATCCTAGAGAATTGACTCCTAAGATAGGTTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCTGGGGCTTTCCCAGTAAAGGAAGTACATAAAATTTCTGTTCTGGACATAAGACTGGCAAATGCAGATCGGCATGCTGGGAATATTTTGATCAGCAAAGAGAAAAGCAATAACCAGTCTGTTCTGATTCCAATTGATCATGGATATTGCTTGCCTACAAGTTTTGAAGATTGTACCTTTGAGTGGCTTTACTGGCCCCAAGCTAGCCAGCCATACTCCCCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGATATTGCCCTTTTAAAATTTCACGGATGGGATCTGCCGGTTGAATGTGCTCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTACAAAGAGGGTTGACCCCCTTTACCATTGGAAGCATGATGTGCAGGGAATCCTTGAACAAGGAATCTGTGATTGAAGAAATAGTTCAAGAAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCCCAAATCATGGATCTGCGCCTGGATGAGATTGTCAGATCTCGTTTATAA 1794 0.4253 MSSAGVSTLSVVPPEPLLSPKAFPFPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIRSVKFKIQRCESLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNVLHLIIKLSDLQVINVKTSSGKEFSFQVERGRDVKFIKRRIAKREKQFDDPEEQELVCNGERLDDQRLIDDICCKHNDAVLHLFVRKKNVKIQRRPLELSILATDLTDEKKNDVNGKTCRRNYDVGKEDTSRKSDAIQRTVPRKPPDRDIFLEPVIINPKIELASSIRNMVNSTYDGLDSGKYPIRSAEGTGGAYFMLDSVGQRYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGRRKLFGDETGFAGVPPTLMIKCLHKAFNYPRELTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKISVLDIRLANADRHAGNILISKEKSNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQASQPYSPETIDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVQRGLTPFTIGSMMCRESLNKESVIEEIVQEALDSVLPGTSEATLLDAVSQIMDLRLDEIVRSRL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01060 597 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Vian6g01060 597 SMART ubq_7 36 109 IPR000626 GO:0005515
Vian6g01060 597 SMART ubq_7 114 188 IPR000626 GO:0005515
Vian6g01060 597 Gene3D - 30 114 - -
Vian6g01060 597 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Vian6g01060 597 SUPERFAMILY Ubiquitin-like 33 110 IPR029071 -
Vian6g01060 597 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 46 567 IPR044571 -
Vian6g01060 597 Gene3D - 115 201 - -
Vian6g01060 597 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Vian6g01060 597 SUPERFAMILY Protein kinase-like (PK-like) 427 592 IPR011009 -
Vian6g01060 597 MobiDBLite consensus disorder prediction 225 247 - -
Vian6g01060 597 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Vian6g01060 597 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Vian6g01060 597 CDD Ubl_ubiquitin_like 116 186 - -
Vian6g01060 597 SUPERFAMILY Ubiquitin-like 109 190 IPR029071 -
Vian6g01060 597 Pfam Phosphatidylinositol 3- and 4-kinase 292 542 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01060 Vian-Chr6 27931057 27932987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01060 33 591 Acyl Lipid Metabolism Gene Families AT5G24240 55.477 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01060 - - gmx:100791631 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01060 6 27931057 27932987 Vian9g00533 9 5920528 5923125 PCT