Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00192 ATGTTGAGAAAAAGCATATCAAAGGGCAAGCTAATGATGCACCTTAACGTCATGCTCAAACGCCGCAGCAAACTCGCCGGCAAAGCCATCACCAACCTCATGTTCCACCACCACAACCACAATGTCGGAGTCCCCGGCAACGACCTCCAGTTCTCAGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCAACAACTTCTTTGCCACCAAGCGCCACCGCCACAACCCTTTCTTCACGTGCGCTCACGCGCCGCCCACCTTCGAGGACGACACCGTGACCGTTAGTGTCGTTAAGGGCGTGTTGGAGATGCTGAACAATGAGGCGGTGGTGGAGGCGCCCCCGGCCGCCGCTTTTCATAGCCCTGTGGTGAGGCAGCTTAGGGTTACAGACTCTCCGTTCCCACTTCGTGAGTACGAGGACGACAAGGATGACCACGTTGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTACAAGGAATTGAAGAAGCAAACTTGA 504 0.5516 MLRKSISKGKLMMHLNVMLKRRSKLAGKAITNLMFHHHNHNVGVPGNDLQFSAAREYEFSCSNTPNNFFATKRHRHNPFFTCAHAPPTFEDDTVTVSVVKGVLEMLNNEAVVEAPPAAAFHSPVVRQLRVTDSPFPLREYEDDKDDHVDKAAEEFIKRFYKELKKQT 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00192 167 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 166 - -
Vian9g00192 167 Pfam Cotton fibre expressed protein 145 166 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00192 Vian-Chr9 1545734 1546237 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00192 - - gmx:100801941 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00192 9 1545734 1546237 Vian11g00191 11 1711257 1711832 ECH
Vian1g04016 1 63239392 63239889 Vian9g00192 9 1545734 1546237 ECH
Vian8g01596 8 35487796 35488362 Vian9g00192 9 1545734 1546237 ECH
Vian9g00192 9 1545734 1546237 Vian9g00192 9 1545734 1546237 ECH
Vian11g00191 11 1711257 1711832 Vian9g00192 9 1545734 1546237 PCT