Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00191 ATGGAAACCAAAGCACCGATAGTAGCCAAGAAAGTCTGGGACATGGTACGTGTGATGTTCTTCATGATGAGAAAAGGTATATCCAAGGGCAAACTCATGATGGACCTCAACGTCATGCTAAAGCGCCGCAGCAAGCTCGCCGGAAAAGCCATTGCAAACCTCATGTCCCACCACCACCACGCCGCCTCCCACGACTCCCACCTTCAATTCTCTGCCCCGAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCAGCGCCTTCTCCTTCCCGGCAATAGGGAAGCGCCACCGCCACTTCTTCGCCTGTGTCCACGCGCCCCCCACACAGGACGACGACTCCGTCACTATGAACGCGGTGAAGACGGTGTTGGAGATGCTGAACAACGACGTCAAGGTCGAGACGACGTCGTCCCCTGCTCTGCCAGGGTTCGGGCGGAGCCCCATGGTGAGGCAACTGAGGGTGACGGACTCGCCGTTCCCTCTGCGAGATTCCGACCAAGACAACGACCACCAGGTCGATAAGGCGGCGGAAGAGTTCATCAAGAGGTTTTACAAGGAGCTCAAGAAGCAGGATTGA 576 0.5694 METKAPIVAKKVWDMVRVMFFMMRKGISKGKLMMDLNVMLKRRSKLAGKAIANLMSHHHHAASHDSHLQFSAPREYEFSCSNTPSAFSFPAIGKRHRHFFACVHAPPTQDDDSVTMNAVKTVLEMLNNDVKVETTSSPALPGFGRSPMVRQLRVTDSPFPLRDSDQDNDHQVDKAAEEFIKRFYKELKKQD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00191 191 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 5 190 - -
Vian11g00191 191 Pfam Cotton fibre expressed protein 170 190 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00191 Vian-Chr11 1711257 1711832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00191 - - gmx:100802625 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00192 9 1545734 1546237 Vian11g00191 11 1711257 1711832 ECH
Vian1g04016 1 63239392 63239889 Vian11g00191 11 1711257 1711832 ECH
Vian8g01596 8 35487796 35488362 Vian11g00191 11 1711257 1711832 ECH
Vian11g00191 11 1711257 1711832 Vian11g00191 11 1711257 1711832 ECH
Vian11g00191 11 1711257 1711832 Vian9g00192 9 1545734 1546237 PCT