Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04016 ATGGCGGAGTTCCATCTCATGCTGAAGCGTGGGAAGAAAGCCTTGGTGAACAACCTCATGCTCAACCACCACTACATCATGGCCTCTTTCACCTGCCGCTCCAACCACAACCACGCCACCTTCATCTCCCCACGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCATCCCCTTCCACGCCGTCAAACGCACCCACAAAAACCACCGCTTCTCCAAACCCTCCCAACACCACGACGTTTCCACCCTCTCCGCCGTTCAGAAGGTTCTCGAAATCCTCAACAACGACGCCAACAACTCACCCTTCCCCGCCTTCGGAAAAAGCCCCGTTGGCAAACAACTCAGAGTCACCGACTCACCCTTCCCTCTCAAAGACGACGGGGATAGCCAAGTCGACGTCGCAGCCGAAGAATTCATTAAGAAGTTCTACAAAGATCTCAACTTGCAGAAAAAAATGGCATATCTTGAGTCCCCATATCATACTTCCTGGAGCAGATGA 498 0.5341 MAEFHLMLKRGKKALVNNLMLNHHYIMASFTCRSNHNHATFISPRDYEFSCSNSPAIPFHAVKRTHKNHRFSKPSQHHDVSTLSAVQKVLEILNNDANNSPFPAFGKSPVGKQLRVTDSPFPLKDDGDSQVDVAAEEFIKKFYKDLNLQKKMAYLESPYHTSWSR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04016 165 Pfam Cotton fibre expressed protein 129 155 IPR008480 -
Vian1g04016 165 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04016 Vian-Chr1 63239392 63239889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04016 - - gmx:100305871 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04016 1 63239392 63239889 Vian9g00192 9 1545734 1546237 ECH
Vian1g04016 1 63239392 63239889 Vian11g00191 11 1711257 1711832 ECH
Vian1g04016 1 63239392 63239889 Vian1g04016 1 63239392 63239889 ECH
Vian1g04016 1 63239392 63239889 Vian8g01596 8 35487796 35488362 PCT