Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01596 ATGGAAATCCAAAAAAGCCCAAGCCCAAGCCCACAGTTGGCGGCGGCGAGGAAGCTCTGGAACGTAGTACGGATCGTGTTCTTGATGTTGAGAAAAGGCATAGCGAAGAGTAAACACGCCATTGACTTCAACTTCAACGGCGGCAAACTCGCCGCCGCCAAAGCCATCCTCCACCTCCAGCGCCACCACCACGACGCCGTTTACCCCCACCGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCGTCACCTTCCCCTTCCACGTCACGAAACGCGGCAAACACCGAACCCGCTTCCCCCAGTACGGCGACGCTTCGAGCGTTCAGAAAGTGCTGGAGATTCTGAACAGCAATAACCAGATGGAGGGTTCTCCTCTGGTGAAGAGTCCGATCGGGAAGAAAGTGAGAATCACGGACTCTCCCTTCCCTCTGAAGGAGGATGACGAGGACAACCAGGTTGACGTGGCGGCTGAGGAGTTCATCAAGAGGTTTTACAAAGACCTCAACTTGCAGCAGAAAATGGCTGCCATTGAATCACCCTACCATTCTAACTTCTGGGGCAGATGA 567 0.5503 MEIQKSPSPSPQLAAARKLWNVVRIVFLMLRKGIAKSKHAIDFNFNGGKLAAAKAILHLQRHHHDAVYPHRDYEFSCSNSPAVTFPFHVTKRGKHRTRFPQYGDASSVQKVLEILNSNNQMEGSPLVKSPIGKKVRITDSPFPLKEDDEDNQVDVAAEEFIKRFYKDLNLQQKMAAIESPYHSNFWGR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01596 188 Pfam Cotton fibre expressed protein 150 172 IPR008480 -
Vian8g01596 188 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 14 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01596 Vian-Chr8 35487796 35488362 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01596 - - vra:106768173 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01596 8 35487796 35488362 Vian9g00192 9 1545734 1546237 ECH
Vian8g01596 8 35487796 35488362 Vian11g00191 11 1711257 1711832 ECH
Vian8g01596 8 35487796 35488362 Vian8g01596 8 35487796 35488362 ECH
Vian1g04016 1 63239392 63239889 Vian8g01596 8 35487796 35488362 PCT