Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01757 ATGGCGTCCCGGCAATGCTCTAAGCGTGGGCGTTCTCTGGGCGATGGGGGTCGCGGAAGCTTTCCTCCTTCGAATCAACCCACAATGGTGGACGCGGGTTCAGTTCTGACCGAGCCTATAAAATTTCTCACTACCGAGGAAGCCAAAGGTGGCAGCGAAGATCAGACCACGACGTTCAACAAATATGCCTTTGCTTGTGCTATAGTTGCTTCAATGGTTTCCATCATCTCTGGTTACGATACTGGTGTGATGAGTGGAGCAATGATATTCATCAAGGACGATATTGGAATCAGCGATACCCAGCAAGAGGTTCTTGCAGGAATCTTGAATCTATGCGCGTTGGCAGGATCATTAGCTGCAGGAAGAACCTCTGATTACATCGGTCGTCGATACACGATTTTGTTAGCCTCCGTTCTGTTCATGCTGGGTGCAATTCTGATGGGGTATGGCCCCAACTATGCAATATTAATGGTTGGAAGGTGCGTTGGTGGTGTGGGTGTGGGTTTTGCTCTTATGATAGGACCGGTTTACTCGGCAGAGATTTCCTCTGCATCATCCAGGGGTTTTCTAACCTCTTTGCCGGAGCTTTGTATCGGCATTGGCATCTTACTTGGCTACGTATCGAACTTCTTCTTGGGAAAATTGACCTTGAAGCTTGGATGGAGGTTGATGCTTGGTGTTGCTGCGCTTCCTTCACTTGCATTGGCTTTGGTTATTCTGGCAATGCCAGAGTCGCCAAGGTGGTTAGTGATGCAGGGTCGTTTGGAAGGTGCGAAGAAGGTGCTATTGAAAGTTTCAAACACCACACAAGAGGCGGAACTTCGGTTCAGCGAAATAAAAGTGGCTGTAGGGTTTGATGAGACGTGTGGCAAGGTCCCTGAGAAGTCACAGGGTGAAGGCGTTTGGAAAGAGTTGCTTGTGAGGCCCACACCGGAAGTTCGTTGGATGCTGATTGCAGCAGTAGGGATTCATTTTTTCGAGCATGCAACTGGGATTGAAGCTGTGATGTTGTATAGTCCGAGAATCTTCAAGAAAGCTGGTGTGAGAAGTAAGGATAAGCTCTTGCTTGCGACTGTTGGAATCGGCCTGACTAAGATAATTTTCTTGTTGATGGCTTTGTTTTTGCTTGACAAAGTTGGTAGAAGGCGGCTCTTGCAAATAAGCACTGGGGGGATGATTTGTGGGCTGACACTTTTGGGTTTTAGTTTGACCATGGTTGATGAATCCAGTAAAAAGGTATTGTGGGCATTGAGTCTTAGCATTGCGGCCACATATGCTTATGTTGCTTTCTTTAACATTGGGCTTGGGCCTGTGACTTGGGTCTACAGCACGGAGATATTTCCTTTGAAGTTGAGGGCGCAAGGGGCTAGTATAGGAGTTGCCGTGAATAGAACCATGAATGCTGTGGTTTCCATGAGCTTTCTTTCAGTCTCCAAAGCATTCACCATTGGTGGCAGCTTCTTCATGTTCGCTGGTGTATCTGTACTCGCTTGGTTCTTCTTTTACTTTTTTCTTCCTGAAACCAAAGGCGTGCCTTTGGAAGACATGGAAATGGTTTTTAGCAAAAAATCCTGCCCTAAAAATGTAGTAACAAAACCTGATCCCAGATAG 1611 0.4687 MASRQCSKRGRSLGDGGRGSFPPSNQPTMVDAGSVLTEPIKFLTTEEAKGGSEDQTTTFNKYAFACAIVASMVSIISGYDTGVMSGAMIFIKDDIGISDTQQEVLAGILNLCALAGSLAAGRTSDYIGRRYTILLASVLFMLGAILMGYGPNYAILMVGRCVGGVGVGFALMIGPVYSAEISSASSRGFLTSLPELCIGIGILLGYVSNFFLGKLTLKLGWRLMLGVAALPSLALALVILAMPESPRWLVMQGRLEGAKKVLLKVSNTTQEAELRFSEIKVAVGFDETCGKVPEKSQGEGVWKELLVRPTPEVRWMLIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVRSKDKLLLATVGIGLTKIIFLLMALFLLDKVGRRRLLQISTGGMICGLTLLGFSLTMVDESSKKVLWALSLSIAATYAYVAFFNIGLGPVTWVYSTEIFPLKLRAQGASIGVAVNRTMNAVVSMSFLSVSKAFTIGGSFFMFAGVSVLAWFFFYFFLPETKGVPLEDMEMVFSKKSCPKNVVTKPDPR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01757 536 Gene3D MFS general substrate transporter like domains 55 524 IPR036259 -
Vian1g01757 536 Pfam Sugar (and other) transporter 66 520 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 MobiDBLite consensus disorder prediction 1 31 - -
Vian1g01757 536 ProSiteProfiles Major facilitator superfamily (MFS) profile. 66 509 IPR020846 GO:0022857
Vian1g01757 536 ProSitePatterns Sugar transport proteins signature 1. 120 137 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 ProSitePatterns Sugar transport proteins signature 1. 372 389 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 SUPERFAMILY MFS general substrate transporter 52 517 IPR036259 -
Vian1g01757 536 PRINTS Sugar transporter signature 444 456 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 PRINTS Sugar transporter signature 421 442 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 PRINTS Sugar transporter signature 74 84 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 PRINTS Sugar transporter signature 157 176 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 PRINTS Sugar transporter signature 327 337 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 ProSitePatterns Sugar transport proteins signature 2. 162 187 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian1g01757 536 FunFam probable polyol transporter 4 56 523 - -
Vian1g01757 536 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 59 524 IPR045262 GO:0015144
Vian1g01757 536 NCBIfam sugar porter family MFS transporter 54 515 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01757 Vian-Chr1 20582600 20589714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01757 54 520 Organic Solute Cotransporters AT2G18480 71.610 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01757 - - var:108328789 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01757 1 20582600 20589714 Vian10g00684 10 6577578 6578957 ECH
Vian1g01757 1 20582600 20589714 Vian1g01757 1 20582600 20589714 ECH
Vian10g00681 10 6562955 6564634 Vian1g01757 1 20582600 20589714 PCT
Vian1g01757 1 20582600 20589714 Vian10g00682 10 6566743 6568131 PCT