Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00681 ATGCCTTCGGAAGATAAAAACACAAAAGGACAACTGTTCATGGAAAACGGCGACAGCCATAGAAGAGTCAACAAGTATGCCTGTGCCTCTGTGCTTGCTGCCTGTATTGTTTCTGCTATGTTTGGTTATGTCACAGGAGTGATGAGTGGAGCACAGATATTCATTCAAGAAGATCTTGGAATCAGTGACCTACAAATACAACTTCTGGTAGGTAGCTTGATCGCAGGAAGAATAGCTGATCATATAGGTCGTCGCTACACCATCATTTTAGCTTGCATCGCCTTCTTATTAGGTTCAATTCTAATGGGGTATGGCCAACCTTACGCAATCTTAATGATTGGAAATTGTATAGTTGGAGTTGGTGTGAGTTTTGCAATGGTTGTAGCACCACTATATAGTGCAGAGATTTCACCTCCTTCTTCCAGAGGCTTTTTTACCTCTCTCCCAACACTTGCCGTCAACACAGGATTCTTGCTTGGATACTTGTCAAACTATTTCTTGGAAAAATTGTCACTGAGACTTGGGTGGAGGTTGATGGTGGCTGTTCCTGCAGTTCCTTCACTTTGCCTAATCCTGATCATGGTAAATCTGGTAGAGTCTCCAAGGTGGTTAGTCATGCAAGGACGTGTCGGTGAGGCCAGAAAAGTGCTTTTACTAGTCTCTAATGCGAAGGAAGAAGCTGAACAAAGGTTGAGGGAAATAAAAAATGTTGTTGGAATTGATGGAAATTGCACCCTAGACATTGTGGAGGTTCCAAAGAAAACTAGCAGCGGAAAAGGAGCTCTGAAGGAGTTGTTTTGTAAAGCTTCACCTGCTGTACGCAGAATACTGTTTTCAGCAGTTGGACTTCATTTGTTCCTGAGGCTTGGTGGAAGTGCGGTTATTTTATTGTATGGTCCAAGGGTGTTTGAGAGAACAGGAATCACTGATAAAAGCACACTCATGCTTGCCAATGTTGGTATAGGAGTGAGCAAAGTTGTTTTTTCATTGATATCAATATTCTTGTCGGATAAATTTGGGAGGAAGATTCTCTTGCTGATTAGTGCTGTAGGTTTGAGTGTGACCATGTCTGGGTTAGCTGTTTGCTTGACCATAGTGGAAAAGTCCAAAGAAAAACTACTTTGGGCACAATATTTGACCATTATTCTTACCTACATCTTTGTGGCTTCTATGTCTATTGGAATAGCACCAGTGACATGGGTTTATAGCTCCGAGATATTTCCTCTTAGGTTCAGAGCACAAGGCCTTAGTATATGCGTGATTGTGAACAGAATTTTTACTGTGGCGGTGGTTACAAGTTTCATATCGATTTATAAAGCCATAACAATGGGTGGGACTTTCTTTGTGTATTCGGGTATTAATATTGTGGCTTTGTTTTTCTATACCACTTTGCCTGAAACTAAAGGAAGTTCATTAGAAGATATGGAGACTGTCTTTGAAAGAAATTCTAAGCAAGAGACACAGATGAAGCCTCCCTGTCCAACGAGCTCTCGAAACCCAAGATTGATTATTGTTGGTTGA 1521 0.4129 MPSEDKNTKGQLFMENGDSHRRVNKYACASVLAACIVSAMFGYVTGVMSGAQIFIQEDLGISDLQIQLLVGSLIAGRIADHIGRRYTIILACIAFLLGSILMGYGQPYAILMIGNCIVGVGVSFAMVVAPLYSAEISPPSSRGFFTSLPTLAVNTGFLLGYLSNYFLEKLSLRLGWRLMVAVPAVPSLCLILIMVNLVESPRWLVMQGRVGEARKVLLLVSNAKEEAEQRLREIKNVVGIDGNCTLDIVEVPKKTSSGKGALKELFCKASPAVRRILFSAVGLHLFLRLGGSAVILLYGPRVFERTGITDKSTLMLANVGIGVSKVVFSLISIFLSDKFGRKILLLISAVGLSVTMSGLAVCLTIVEKSKEKLLWAQYLTIILTYIFVASMSIGIAPVTWVYSSEIFPLRFRAQGLSICVIVNRIFTVAVVTSFISIYKAITMGGTFFVYSGINIVALFFYTTLPETKGSSLEDMETVFERNSKQETQMKPPCPTSSRNPRLIIVG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00681 506 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 469 IPR020846 GO:0022857
Vian10g00681 506 Pfam Sugar (and other) transporter 32 479 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 PRINTS Sugar transporter signature 112 131 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 PRINTS Sugar transporter signature 404 416 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 PRINTS Sugar transporter signature 381 402 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 FunFam probable polyol transporter 4 20 482 - -
Vian10g00681 506 Gene3D MFS general substrate transporter like domains 19 484 IPR036259 -
Vian10g00681 506 SUPERFAMILY MFS general substrate transporter 20 476 IPR036259 -
Vian10g00681 506 ProSitePatterns Sugar transport proteins signature 1. 332 349 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 ProSitePatterns Sugar transport proteins signature 1. 75 91 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 NCBIfam sugar porter family MFS transporter 26 474 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00681 506 Coils Coil 217 237 - -
Vian10g00681 506 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 15 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00681 Vian-Chr10 6562955 6564634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00681 16 485 Organic Solute Cotransporters AT4G36670 49.167 5.06e-167 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00681 - - gmx:100813954 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00681 10 6562955 6564634 Vian1g01757 1 20582600 20589714 PCT