Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00682 ATGAGCGGAGCACTTATATTCATTCAAGAAGATCTTGAAATCAGTGACTTTGAAATACAAATCCTAGCAGGCATGTTACATTTATGTGCACTACCAAGTAGTTTGGTTGCAGGAAGAACATCTGATTACATAGGTCGCCGCTATACCATCATTCTCGCCTCCTTCGCCTTTTTGTTGGGCACTGTTCTGATGGGCTATGGCGCATCCTATCTAATCTTAATGATTGGTAATTGCATTCTTGGAATTGGTGTGGGTTTTGCATTGGTAGTAGCATCGGTTTACAGTGCAGAGATTTCACCTCCTTCTTCCAGAGGCTTTTTTACCTCTCTCCCGCAAGTTTCCCTCAACATAGGACTCTTGCTAGGCTACATGGCAAACTATTTCTTTGAAAAATTGTCACTGAGACTTGGATGGAGAATGATGGTGGCTGTTCCTTCAATCCCTTCACTTGTTCTTATCATTCTCATGTTAAAACTGGTAGAGTCTCCTAGGTGGTTAGTCATGCAAGGACGTGTAGGTGAGGCAAGGAAAGTGCTTCTGCTGGTTTCTAATACAAAGGAGGAAGCCGAACACAGGCTGAGAGAAATAAAAGGTGTTGTTGGAATTGATGAAAACTGCACCCAAGACACGGTGGAGGTTCCAAAGAAAACTCGCAGCGGTGAAGGAGCTCTAAAAGAATTGTTTTGTAATGCTTCACCTTCTGTTCGTAGGATGTTAATTGCAGCCATTGGACTTCATTTGTTCCTACGGATTGGTGGAAGTGGGGGTATTTATTTATACAGTCCAAGGGTTTTTCAGAGAACAGGAATCACTAACAAGAGCAAGCTCATGCTAGCCACTGTCGGCATGGGAGTAAGCAAAGTTGTATCTTCATTGACATCGATGTTTTTGTTGGATAAATTTGGGAGGAGGATTCTTTTGCTGATTAGTGCAACAGGTGTTGTTGTCAGCCTATTAGGGTTGGGTTTTTGCTTGAGCATAGTAGAACATTCAAAGGAAAAACTAGTGTGGGCATCGAGTTTTACCATTATTCTTACCTACTTCTTTGTGGGTTTTATGTCTATTGGGATAGGACCAGTTACATGGGTTTATAGCTCTGAGATATTACCCCTTAGGTTCAGAGCTCAAGGTCTTGGTTTATGTGTGGTTCTGAACAGAATTACAACTGTGATAGTGGTTACAAGCTTCATTTCAATTTATAAAGCAACTACAATGGGTGGGATTTTCTTTCTGTTTGCTGCTATCAATGCTTTTGCTTTGTGGTTCTACTATACCTTGCCCGAAACTAAAGGAAGATTATTAGAAGATATGGAGACTATCTTTGAGAAAAATTCTAAGTTGGAGATACAAATGAAGCCCCATACCAACCTTCGGTTGCTTTGTCGCTAG 1389 0.4125 MSGALIFIQEDLEISDFEIQILAGMLHLCALPSSLVAGRTSDYIGRRYTIILASFAFLLGTVLMGYGASYLILMIGNCILGIGVGFALVVASVYSAEISPPSSRGFFTSLPQVSLNIGLLLGYMANYFFEKLSLRLGWRMMVAVPSIPSLVLIILMLKLVESPRWLVMQGRVGEARKVLLLVSNTKEEAEHRLREIKGVVGIDENCTQDTVEVPKKTRSGEGALKELFCNASPSVRRMLIAAIGLHLFLRIGGSGGIYLYSPRVFQRTGITNKSKLMLATVGMGVSKVVSSLTSMFLLDKFGRRILLLISATGVVVSLLGLGFCLSIVEHSKEKLVWASSFTIILTYFFVGFMSIGIGPVTWVYSSEILPLRFRAQGLGLCVVLNRITTVIVVTSFISIYKATTMGGIFFLFAAINAFALWFYYTLPETKGRLLEDMETIFEKNSKLEIQMKPHTNLRLLCR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00682 462 FunFam probable polyol transporter 4 1 444 - -
Vian10g00682 462 Pfam Sugar (and other) transporter 17 441 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 ProSitePatterns Sugar transport proteins signature 2. 79 104 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 ProSitePatterns Sugar transport proteins signature 1. 37 54 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 ProSitePatterns Sugar transport proteins signature 1. 294 311 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 NCBIfam sugar porter family MFS transporter 14 436 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 14 445 IPR045262 GO:0015144
Vian10g00682 462 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 431 IPR020846 GO:0022857
Vian10g00682 462 PRINTS Sugar transporter signature 74 93 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 PRINTS Sugar transporter signature 343 364 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 PRINTS Sugar transporter signature 366 378 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00682 462 SUPERFAMILY MFS general substrate transporter 2 438 IPR036259 -
Vian10g00682 462 Gene3D MFS general substrate transporter like domains 2 446 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00682 Vian-Chr10 6566743 6568131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00682 1 446 Organic Solute Cotransporters AT4G36670 51.007 1.49e-167 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00682 - - gmx:102662503 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01757 1 20582600 20589714 Vian10g00682 10 6566743 6568131 PCT