Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00684 ATGAGTGGAGCACTGATATTCATAAGGGAGGAGCTAGGAATCAGTGACACCCAACAAGAAGTTCTTGCAGGCATCTTAAACGTTTGTGCATTGGTAGGGTCTTTAGTTGCAGGAAGGACCGCTGATTACATTGGTCGACGGTACACAATTTCCTTAGCATCCATCCTTTTCTTGGTTGGTTCAGTACTCATGGGATATGGACCAAACTACGGACTTGTAATGGCGGGAAGGTGTGTGGCGGGTGTTGGAGTGGGTTTTGCTCTTTTGATAGCACCGGTTTATTCTGCAGAAATCTCCTCTGCTGAAGCCCGAGGCTTTGTAGCTTCCCTACCTGAGCTTTGTATCGGCATTGGAATTTTACTTGGTTACATAGTGAACTACTTGTTAGGGAAATTGCCTTTGAAGCTTGGATGGAGATTGATGCTTGGTCTTGCAGCAGTTCCTTCACTTGCTTTGGCTGTGGGCATTCTCGCAATGCCGGAGTCTCCGAGGTGGTTGGTGGTGCAAGGCCATTTAGCAAAAGCAAAGAACGTTCTATTACAAGTTTCAGACAGTGAAGAAGAAGCCGAGCTTCGGTTCAGGGAGATAAAGAGTGCTGCTGGGATTGACGAGGATTGCACTGAGGAAATGGTTAAAGGCTCTCGAAATAGCTCTGGTGAAGGGGTTTGGAAAGAGCTGATTTGGAGGCCTTCTTATCCTGTTCGCAGGATGTTGATTGCAGCAGTGGGGATTCACTTTTTTGAGCATGCCACCGGAATTGAAGCTGTTATGTTATACAGTCACAGAATCTTCAAGAAAGCTGGTGTTACCAGTAAGGACAAGCTTTTGCTCGCCACCATTGGAATAGGCGTTACAAAAGTCTCTTGCTTGATAATGGCCACTTTTTATCTTGACAGAATTGGAAGACGCCGCCTCTTGTTTATAAGCACTACAGGAATGATTTTTAGCCTTACCTTGTTGGGATTCAGCTTGACAATGGTGGAGAAATCTCATGAGAAGCTGGAGTGGGCCTTGGTTCTCAGCTTGGTGTTTACTTACGTATATGTTGGATTTTTCAATCTTGGACTTGCACCTGTGACATGGGTGTATGGCTCAGAGATTTTCCCTCTGAGGTTGAGAGCACAAGGAGCAAGTATAGGAGTTGCAGTGAACAGACTCACCAATGCTACTATTTCCATGACTTTTATTACAATCTATAATGCAATAACTATTGGGGGCGTCTTTTTCTTGTTTGCTGGTTCATCTGTTCTGGCTTGGCTCTTCTTCTACTTTTTCTTGCCCGAAACCAAGGGCAAGGCCTTGGAAGAGATGGAGATGGTTTTCAGCAAAAAGTCTCAAAGGAATGCAACTGCAGAAACCGAAACGGGGCAGAATGTGTAG 1380 0.4522 MSGALIFIREELGISDTQQEVLAGILNVCALVGSLVAGRTADYIGRRYTISLASILFLVGSVLMGYGPNYGLVMAGRCVAGVGVGFALLIAPVYSAEISSAEARGFVASLPELCIGIGILLGYIVNYLLGKLPLKLGWRLMLGLAAVPSLALAVGILAMPESPRWLVVQGHLAKAKNVLLQVSDSEEEAELRFREIKSAAGIDEDCTEEMVKGSRNSSGEGVWKELIWRPSYPVRRMLIAAVGIHFFEHATGIEAVMLYSHRIFKKAGVTSKDKLLLATIGIGVTKVSCLIMATFYLDRIGRRRLLFISTTGMIFSLTLLGFSLTMVEKSHEKLEWALVLSLVFTYVYVGFFNLGLAPVTWVYGSEIFPLRLRAQGASIGVAVNRLTNATISMTFITIYNAITIGGVFFLFAGSSVLAWLFFYFFLPETKGKALEEMEMVFSKKSQRNATAETETGQNV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00684 459 ProSitePatterns Sugar transport proteins signature 1. 37 54 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 ProSitePatterns Sugar transport proteins signature 2. 79 104 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 FunFam probable polyol transporter 4 1 444 - -
Vian10g00684 459 Gene3D MFS general substrate transporter like domains 3 446 IPR036259 -
Vian10g00684 459 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 430 IPR020846 GO:0022857
Vian10g00684 459 Pfam Sugar (and other) transporter 15 441 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 15 445 IPR045262 GO:0015144
Vian10g00684 459 PRINTS Sugar transporter signature 248 258 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 PRINTS Sugar transporter signature 342 363 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 PRINTS Sugar transporter signature 74 93 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 PRINTS Sugar transporter signature 365 377 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 NCBIfam sugar porter family MFS transporter 14 437 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian10g00684 459 SUPERFAMILY MFS general substrate transporter 2 438 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00684 Vian-Chr10 6577578 6578957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00684 1 447 Organic Solute Cotransporters AT4G36670 63.393 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00684 - - gmx:102661358 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01757 1 20582600 20589714 Vian10g00684 10 6577578 6578957 ECH
Vian10g00684 10 6577578 6578957 Vian10g00684 10 6577578 6578957 ECH